2.500 Å
X-ray
2011-12-14
| Name: | Alanine--anticapsin ligase |
|---|---|
| ID: | BACD_BACSU |
| AC: | P39641 |
| Organism: | Bacillus subtilis |
| Reign: | Bacteria |
| TaxID: | 224308 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 34.444 |
|---|---|
| Number of residues: | 37 |
| Including | |
| Standard Amino Acids: | 32 |
| Non Standard Amino Acids: | 3 |
| Water Molecules: | 2 |
| Cofactors: | ADP |
| Metals: | MG MG |
| Ligandability | Volume (Å3) |
|---|---|
| 1.219 | 1316.250 |
| % Hydrophobic | % Polar |
|---|---|
| 36.92 | 63.08 |
| According to VolSite | |

| HET Code: | P0D |
|---|---|
| Formula: | C12H17NO7P2 |
| Molecular weight: | 349.213 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 69.25 % |
| Polar Surface area: | 176.88 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 7 |
| H-Bond Donors: | 1 |
| Rings: | 1 |
| Aromatic rings: | 1 |
| Anionic atoms: | 3 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| -0.370591 | -47.1757 | -8.14227 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C34 | CB | LEU- 12 | 3.68 | 0 | Hydrophobic |
| O1 | N | GLY- 14 | 2.84 | 155.18 | H-Bond (Protein Donor) |
| C35 | CB | GLU- 109 | 4.08 | 0 | Hydrophobic |
| C33 | CB | ALA- 183 | 3.99 | 0 | Hydrophobic |
| O4P | N | SER- 184 | 2.71 | 142.34 | H-Bond (Protein Donor) |
| C3' | CB | SER- 184 | 4.17 | 0 | Hydrophobic |
| N1 | OE1 | GLU- 273 | 2.96 | 126.92 | H-Bond (Ligand Donor) |
| N1 | OE1 | GLU- 273 | 2.96 | 0 | Ionic (Ligand Cationic) |
| N1 | NE2 | HIS- 309 | 2.94 | 162.15 | H-Bond (Ligand Donor) |
| N1 | OE2 | GLU- 311 | 2.97 | 0 | Ionic (Ligand Cationic) |
| O1 | CZ | ARG- 328 | 3.97 | 0 | Ionic (Protein Cationic) |
| O1P | NH1 | ARG- 328 | 3.39 | 156.48 | H-Bond (Protein Donor) |
| O2P | NH2 | ARG- 328 | 3.11 | 159.81 | H-Bond (Protein Donor) |
| O1P | N | GLY- 331 | 2.92 | 152.17 | H-Bond (Protein Donor) |
| C2 | CE | MET- 334 | 3.73 | 0 | Hydrophobic |
| O5P | MG | MG- 501 | 2.03 | 0 | Metal Acceptor |
| O1 | O | HOH- 650 | 2.72 | 179.99 | H-Bond (Protein Donor) |
| N1 | O | HOH- 656 | 3.21 | 138.15 | H-Bond (Ligand Donor) |