2.350 Å
X-ray
2011-10-12
| Name: | Phosphoribosylformylglycinamidine synthase subunit PurL |
|---|---|
| ID: | PURL_THET8 |
| AC: | Q5SMH8 |
| Organism: | Thermus thermophilus |
| Reign: | Bacteria |
| TaxID: | 300852 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 21.543 |
|---|---|
| Number of residues: | 38 |
| Including | |
| Standard Amino Acids: | 37 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.932 | 1285.875 |
| % Hydrophobic | % Polar |
|---|---|
| 30.97 | 69.03 |
| According to VolSite | |

| HET Code: | ADP |
|---|---|
| Formula: | C10H12N5O10P2 |
| Molecular weight: | 424.177 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 56.81 % |
| Polar Surface area: | 260.7 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 14 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 3 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| 38.8204 | -13.0651 | 10.1874 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C5' | CE1 | TYR- 44 | 4.38 | 0 | Hydrophobic |
| O3' | N | GLY- 66 | 3.33 | 155.92 | H-Bond (Protein Donor) |
| O3' | O | GLU- 67 | 2.69 | 127.66 | H-Bond (Ligand Donor) |
| O2B | NZ | LYS- 83 | 2.74 | 127.63 | H-Bond (Protein Donor) |
| O3A | NZ | LYS- 83 | 3.13 | 138.74 | H-Bond (Protein Donor) |
| O2B | NZ | LYS- 83 | 2.74 | 0 | Ionic (Protein Cationic) |
| N6 | OD1 | ASP- 485 | 2.96 | 144.84 | H-Bond (Ligand Donor) |
| N1 | OD2 | ASP- 485 | 2.67 | 154.03 | H-Bond (Protein Donor) |
| O2' | N | GLY- 522 | 3.17 | 153.3 | H-Bond (Protein Donor) |
| N6 | O | ASN- 523 | 3.16 | 121.2 | H-Bond (Ligand Donor) |