2.100 Å
X-ray
2011-09-16
| Name: | Orotidine 5'-monophosphate decarboxylase |
|---|---|
| ID: | Q8T6J6_PLAFA |
| AC: | Q8T6J6 |
| Organism: | Plasmodium falciparum |
| Reign: | Eukaryota |
| TaxID: | 5833 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 89 % |
| B | 11 % |
| B-Factor: | 50.332 |
|---|---|
| Number of residues: | 31 |
| Including | |
| Standard Amino Acids: | 28 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 3 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.687 | 597.375 |
| % Hydrophobic | % Polar |
|---|---|
| 48.02 | 51.98 |
| According to VolSite | |

| HET Code: | HMZ |
|---|---|
| Formula: | C11H11O5 |
| Molecular weight: | 223.202 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 61.21 % |
| Polar Surface area: | 86.66 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 5 |
| H-Bond Donors: | 1 |
| Rings: | 1 |
| Aromatic rings: | 1 |
| Anionic atoms: | 1 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 5 |
| X | Y | Z |
|---|---|---|
| 21.479 | 34.8013 | 13.5257 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| CAI | CD1 | ILE- 142 | 3.55 | 0 | Hydrophobic |
| OAE | N | ALA- 268 | 3.41 | 121.56 | H-Bond (Protein Donor) |
| CAJ | CB | ALA- 268 | 4.31 | 0 | Hydrophobic |
| CAP | CB | ALA- 268 | 4 | 0 | Hydrophobic |
| OAE | N | GLN- 269 | 3.49 | 153.72 | H-Bond (Protein Donor) |
| CAJ | CB | GLN- 269 | 3.93 | 0 | Hydrophobic |
| OAC | NH1 | ARG- 294 | 2.65 | 172.79 | H-Bond (Protein Donor) |
| CAF | CG | ARG- 294 | 3.88 | 0 | Hydrophobic |
| CAG | CD | ARG- 294 | 3.3 | 0 | Hydrophobic |