1.650 Å
X-ray
2011-07-26
Name: | Alpha-ketoglutarate-dependent dioxygenase AlkB |
---|---|
ID: | ALKB_ECOLI |
AC: | P05050 |
Organism: | Escherichia coli |
Reign: | Bacteria |
TaxID: | 83333 |
EC Number: | 1.14.11.33 |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 21.556 |
---|---|
Number of residues: | 40 |
Including | |
Standard Amino Acids: | 37 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 2 |
Cofactors: | |
Metals: | FE |
Ligandability | Volume (Å3) |
---|---|
0.842 | 617.625 |
% Hydrophobic | % Polar |
---|---|
48.09 | 51.91 |
According to VolSite |
HET Code: | MD5 |
---|---|
Formula: | C12H10N2O7S |
Molecular weight: | 326.282 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 78.82 % |
Polar Surface area: | 180.48 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 8 |
H-Bond Donors: | 1 |
Rings: | 1 |
Aromatic rings: | 1 |
Anionic atoms: | 3 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
-2.93014 | 2.66836 | 3.50059 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
OAJ | ND2 | ASN- 120 | 3.11 | 143.9 | H-Bond (Protein Donor) |
O | ND2 | ASN- 120 | 2.85 | 165.84 | H-Bond (Protein Donor) |
O | OH | TYR- 122 | 2.5 | 163.18 | H-Bond (Protein Donor) |
CAO | CG2 | ILE- 143 | 4.14 | 0 | Hydrophobic |
CAP | CD1 | ILE- 143 | 3.97 | 0 | Hydrophobic |
SAL | CB | SER- 145 | 3.94 | 0 | Hydrophobic |
CAM | CE1 | PHE- 154 | 3.55 | 0 | Hydrophobic |
CAS | CZ | PHE- 154 | 3.36 | 0 | Hydrophobic |
CAM | CE2 | TRP- 178 | 4.16 | 0 | Hydrophobic |
CAS | CE2 | TRP- 178 | 3.47 | 0 | Hydrophobic |
CAQ | CB | TRP- 178 | 3.77 | 0 | Hydrophobic |
CAS | CB | HIS- 187 | 4.05 | 0 | Hydrophobic |
DuAr | DuAr | HIS- 187 | 3.6 | 0 | Aromatic Face/Face |
OXT | NH1 | ARG- 204 | 2.9 | 152.88 | H-Bond (Protein Donor) |
OXT | NH2 | ARG- 204 | 3.11 | 140.94 | H-Bond (Protein Donor) |
OXT | CZ | ARG- 204 | 3.44 | 0 | Ionic (Protein Cationic) |
CB | CG2 | THR- 208 | 3.52 | 0 | Hydrophobic |
OAH | FE | FE- 300 | 2.18 | 0 | Metal Acceptor |
OAI | FE | FE- 300 | 2.17 | 0 | Metal Acceptor |