3.000 Å
X-ray
2011-07-22
Name: | Fructose-1,6-bisphosphate aldolase/phosphatase |
---|---|
ID: | B1YAL1_PYRNV |
AC: | B1YAL1 |
Organism: | Pyrobaculum neutrophilum |
Reign: | Archaea |
TaxID: | 444157 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 37.678 |
---|---|
Number of residues: | 24 |
Including | |
Standard Amino Acids: | 21 |
Non Standard Amino Acids: | 3 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | MG MG |
Ligandability | Volume (Å3) |
---|---|
0.498 | 789.750 |
% Hydrophobic | % Polar |
---|---|
38.03 | 61.97 |
According to VolSite |
HET Code: | 13P |
---|---|
Formula: | C3H5O6P |
Molecular weight: | 168.042 g/mol |
DrugBank ID: | DB04326 |
Buried Surface Area: | 71.39 % |
Polar Surface area: | 119.53 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 6 |
H-Bond Donors: | 1 |
Rings: | 0 |
Aromatic rings: | 0 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 4 |
X | Y | Z |
---|---|---|
-62.0477 | 28.7874 | 17.7256 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C3 | CB | HIS- 18 | 4.21 | 0 | Hydrophobic |
O2P | NZ | LYS- 133 | 2.85 | 130.88 | H-Bond (Protein Donor) |
O2P | NZ | LYS- 133 | 2.85 | 0 | Ionic (Protein Cationic) |
O3 | N | ARG- 266 | 2.74 | 166 | H-Bond (Protein Donor) |
O3 | OD2 | ASP- 297 | 2.93 | 162.31 | H-Bond (Ligand Donor) |
O2P | MG | MG- 408 | 2.03 | 0 | Metal Acceptor |
O3P | MG | MG- 409 | 2.41 | 0 | Metal Acceptor |