sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
2.800 Å
X-ray
2011-06-22
| Name: | Translation initiation factor 2 subunit gamma |
|---|---|
| ID: | IF2G_SULSO |
| AC: | Q980A5 |
| Organism: | Sulfolobus solfataricus |
| Reign: | Archaea |
| TaxID: | 273057 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 44.110 |
|---|---|
| Number of residues: | 32 |
| Including | |
| Standard Amino Acids: | 31 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.321 | 577.125 |
| % Hydrophobic | % Polar |
|---|---|
| 46.78 | 53.22 |
| According to VolSite | |
| HET Code: | GNP |
|---|---|
| Formula: | C10H13N6O13P3 |
| Molecular weight: | 518.164 g/mol |
| DrugBank ID: | DB02082 |
| Buried Surface Area: | 58.51 % |
| Polar Surface area: | 338.36 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 16 |
| H-Bond Donors: | 5 |
| Rings: | 3 |
| Aromatic rings: | 1 |
| Anionic atoms: | 4 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 2 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| -71.4361 | 22.2852 | -10.6238 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C3' | CB | GLU- 40 | 4.33 | 0 | Hydrophobic |
| O2B | OG1 | THR- 46 | 3.22 | 148.41 | H-Bond (Protein Donor) |
| C4' | CB | THR- 46 | 4.4 | 0 | Hydrophobic |
| C4' | CE1 | PHE- 221 | 4.23 | 0 | Hydrophobic |
| O1G | NZ | LYS- 225 | 3.34 | 128.87 | H-Bond (Protein Donor) |
| O1B | NZ | LYS- 225 | 2.9 | 157.62 | H-Bond (Protein Donor) |
| O1G | NZ | LYS- 225 | 3.34 | 0 | Ionic (Protein Cationic) |
| O1B | NZ | LYS- 225 | 2.9 | 0 | Ionic (Protein Cationic) |
| O1A | NZ | LYS- 225 | 3.48 | 0 | Ionic (Protein Cationic) |
| O6 | NZ | LYS- 234 | 3 | 153.01 | H-Bond (Protein Donor) |
| N1 | OG | SER- 278 | 2.8 | 142.32 | H-Bond (Ligand Donor) |
| N2 | OG | SER- 278 | 2.64 | 149.47 | H-Bond (Ligand Donor) |
| C2' | CD | ARG- 280 | 4.5 | 0 | Hydrophobic |
| O2' | O | GLY- 282 | 3.29 | 129.75 | H-Bond (Ligand Donor) |
| N2 | O | ALA- 296 | 2.91 | 155.64 | H-Bond (Ligand Donor) |
| C1' | CB | ALA- 296 | 3.63 | 0 | Hydrophobic |
