2.500 Å
X-ray
2011-06-14
Name: | Polyprotein |
---|---|
ID: | Q80J95_9CALI |
AC: | Q80J95 |
Organism: | Murine norovirus 1 |
Reign: | Viruses |
TaxID: | 223997 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
C | 100 % |
B-Factor: | 26.610 |
---|---|
Number of residues: | 22 |
Including | |
Standard Amino Acids: | 22 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.236 | 877.500 |
% Hydrophobic | % Polar |
---|---|
34.23 | 65.77 |
According to VolSite |
HET Code: | RBV |
---|---|
Formula: | C8H12N4O5 |
Molecular weight: | 244.205 g/mol |
DrugBank ID: | DB00811 |
Buried Surface Area: | 52.76 % |
Polar Surface area: | 143.72 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 7 |
H-Bond Donors: | 4 |
Rings: | 2 |
Aromatic rings: | 1 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 3 |
X | Y | Z |
---|---|---|
-82.6215 | 47.3925 | -14.0416 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2' | OD1 | ASP- 250 | 3.45 | 140.03 | H-Bond (Ligand Donor) |
C2' | CD2 | LEU- 301 | 3.94 | 0 | Hydrophobic |
C3' | CB | THR- 309 | 3.86 | 0 | Hydrophobic |
C3' | CB | ASN- 312 | 4.02 | 0 | Hydrophobic |
O5' | OD1 | ASP- 346 | 3.44 | 133.57 | H-Bond (Ligand Donor) |