1.650 Å
X-ray
2011-03-09
| Name: | Pol protein |
|---|---|
| ID: | Q000H7_9HIV1 |
| AC: | Q000H7 |
| Organism: | Human immunodeficiency virus 1 |
| Reign: | Viruses |
| TaxID: | 11676 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 44 % |
| B | 56 % |
| B-Factor: | 22.339 |
|---|---|
| Number of residues: | 36 |
| Including | |
| Standard Amino Acids: | 34 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 2 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.295 | 384.750 |
| % Hydrophobic | % Polar |
|---|---|
| 39.47 | 60.53 |
| According to VolSite | |

| HET Code: | RSZ |
|---|---|
| Formula: | C34H39N5O5 |
| Molecular weight: | 597.704 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 38.66 % |
| Polar Surface area: | 149.51 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 6 |
| H-Bond Donors: | 5 |
| Rings: | 3 |
| Aromatic rings: | 3 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 15 |
| X | Y | Z |
|---|---|---|
| 14.1238 | 9.32434 | -0.0489773 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O42 | ND2 | ASN- 25 | 3.11 | 149.41 | H-Bond (Protein Donor) |
| O42 | ND2 | ASN- 25 | 2.99 | 148.24 | H-Bond (Protein Donor) |
| O43 | ND2 | ASN- 25 | 2.84 | 126.09 | H-Bond (Protein Donor) |
| C39 | CB | ILE- 47 | 3.89 | 0 | Hydrophobic |
| C08 | CB | ILE- 50 | 4.4 | 0 | Hydrophobic |
| C09 | CG1 | ILE- 50 | 3.68 | 0 | Hydrophobic |
| C18 | CG | PRO- 81 | 3.71 | 0 | Hydrophobic |
| C36 | CG | PRO- 81 | 3.74 | 0 | Hydrophobic |
| C30 | CB | THR- 82 | 4.2 | 0 | Hydrophobic |
| C29 | CG2 | THR- 82 | 3.74 | 0 | Hydrophobic |
| C19 | CB | THR- 82 | 3.65 | 0 | Hydrophobic |
| C18 | CG2 | VAL- 84 | 4.21 | 0 | Hydrophobic |
| C19 | CG2 | VAL- 84 | 4.44 | 0 | Hydrophobic |
| C30 | CG2 | VAL- 84 | 3.37 | 0 | Hydrophobic |