1.650 Å
X-ray
2011-03-09
Name: | Pol protein |
---|---|
ID: | Q000H7_9HIV1 |
AC: | Q000H7 |
Organism: | Human immunodeficiency virus 1 |
Reign: | Viruses |
TaxID: | 11676 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 44 % |
B | 56 % |
B-Factor: | 22.339 |
---|---|
Number of residues: | 36 |
Including | |
Standard Amino Acids: | 34 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.295 | 384.750 |
% Hydrophobic | % Polar |
---|---|
39.47 | 60.53 |
According to VolSite |
HET Code: | RSZ |
---|---|
Formula: | C34H39N5O5 |
Molecular weight: | 597.704 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 38.66 % |
Polar Surface area: | 149.51 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 6 |
H-Bond Donors: | 5 |
Rings: | 3 |
Aromatic rings: | 3 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 15 |
X | Y | Z |
---|---|---|
14.1238 | 9.32434 | -0.0489773 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O42 | ND2 | ASN- 25 | 3.11 | 149.41 | H-Bond (Protein Donor) |
O42 | ND2 | ASN- 25 | 2.99 | 148.24 | H-Bond (Protein Donor) |
O43 | ND2 | ASN- 25 | 2.84 | 126.09 | H-Bond (Protein Donor) |
C39 | CB | ILE- 47 | 3.89 | 0 | Hydrophobic |
C08 | CB | ILE- 50 | 4.4 | 0 | Hydrophobic |
C09 | CG1 | ILE- 50 | 3.68 | 0 | Hydrophobic |
C18 | CG | PRO- 81 | 3.71 | 0 | Hydrophobic |
C36 | CG | PRO- 81 | 3.74 | 0 | Hydrophobic |
C30 | CB | THR- 82 | 4.2 | 0 | Hydrophobic |
C29 | CG2 | THR- 82 | 3.74 | 0 | Hydrophobic |
C19 | CB | THR- 82 | 3.65 | 0 | Hydrophobic |
C18 | CG2 | VAL- 84 | 4.21 | 0 | Hydrophobic |
C19 | CG2 | VAL- 84 | 4.44 | 0 | Hydrophobic |
C30 | CG2 | VAL- 84 | 3.37 | 0 | Hydrophobic |