2.200 Å
X-ray
2011-01-21
Name: | Serine/threonine-protein kinase pim-1 |
---|---|
ID: | PIM1_HUMAN |
AC: | P11309 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 2.7.11.1 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 39.756 |
---|---|
Number of residues: | 30 |
Including | |
Standard Amino Acids: | 27 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 3 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.557 | 418.500 |
% Hydrophobic | % Polar |
---|---|
67.74 | 32.26 |
According to VolSite |
HET Code: | NM8 |
---|---|
Formula: | C33H29F3N4O4S |
Molecular weight: | 634.668 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 56.46 % |
Polar Surface area: | 123.46 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 5 |
H-Bond Donors: | 2 |
Rings: | 6 |
Aromatic rings: | 4 |
Anionic atoms: | 1 |
Cationic atoms: | 1 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
-19.9169 | 37.8535 | -0.547577 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
CAF | CD1 | LEU- 44 | 3.63 | 0 | Hydrophobic |
CAE | CD1 | LEU- 44 | 3.75 | 0 | Hydrophobic |
CAC | CB | LEU- 44 | 4.14 | 0 | Hydrophobic |
SAQ | CG2 | VAL- 52 | 4.05 | 0 | Hydrophobic |
NAO | NZ | LYS- 67 | 3.04 | 161.44 | H-Bond (Protein Donor) |
CAF | CG | ARG- 122 | 4.44 | 0 | Hydrophobic |
CAA | CG1 | VAL- 126 | 3.6 | 0 | Hydrophobic |
CAD | CD2 | LEU- 174 | 4.31 | 0 | Hydrophobic |
CAE | CD1 | LEU- 174 | 3.99 | 0 | Hydrophobic |
SAQ | CD1 | ILE- 185 | 3.94 | 0 | Hydrophobic |
OAR | N | ASP- 186 | 3.19 | 149.06 | H-Bond (Protein Donor) |
OAR | O | HOH- 327 | 2.82 | 167.45 | H-Bond (Protein Donor) |
NAZ | O | HOH- 390 | 3.27 | 151.8 | H-Bond (Ligand Donor) |