2.200 Å
X-ray
2011-01-21
| Name: | Serine/threonine-protein kinase pim-1 |
|---|---|
| ID: | PIM1_HUMAN |
| AC: | P11309 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | 2.7.11.1 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 39.756 |
|---|---|
| Number of residues: | 30 |
| Including | |
| Standard Amino Acids: | 27 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 3 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.557 | 418.500 |
| % Hydrophobic | % Polar |
|---|---|
| 67.74 | 32.26 |
| According to VolSite | |

| HET Code: | NM8 |
|---|---|
| Formula: | C33H29F3N4O4S |
| Molecular weight: | 634.668 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 56.46 % |
| Polar Surface area: | 123.46 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 5 |
| H-Bond Donors: | 2 |
| Rings: | 6 |
| Aromatic rings: | 4 |
| Anionic atoms: | 1 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| -19.9169 | 37.8535 | -0.547577 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| CAF | CD1 | LEU- 44 | 3.63 | 0 | Hydrophobic |
| CAE | CD1 | LEU- 44 | 3.75 | 0 | Hydrophobic |
| CAC | CB | LEU- 44 | 4.14 | 0 | Hydrophobic |
| SAQ | CG2 | VAL- 52 | 4.05 | 0 | Hydrophobic |
| NAO | NZ | LYS- 67 | 3.04 | 161.44 | H-Bond (Protein Donor) |
| CAF | CG | ARG- 122 | 4.44 | 0 | Hydrophobic |
| CAA | CG1 | VAL- 126 | 3.6 | 0 | Hydrophobic |
| CAD | CD2 | LEU- 174 | 4.31 | 0 | Hydrophobic |
| CAE | CD1 | LEU- 174 | 3.99 | 0 | Hydrophobic |
| SAQ | CD1 | ILE- 185 | 3.94 | 0 | Hydrophobic |
| OAR | N | ASP- 186 | 3.19 | 149.06 | H-Bond (Protein Donor) |
| OAR | O | HOH- 327 | 2.82 | 167.45 | H-Bond (Protein Donor) |
| NAZ | O | HOH- 390 | 3.27 | 151.8 | H-Bond (Ligand Donor) |