2.520 Å
X-ray
2011-01-02
Name: | 43.2 kDa salivary protein |
---|---|
ID: | Q5WPU9_LUTLO |
AC: | Q5WPU9 |
Organism: | Lutzomyia longipalpis |
Reign: | Eukaryota |
TaxID: | 7200 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 41.096 |
---|---|
Number of residues: | 27 |
Including | |
Standard Amino Acids: | 27 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.116 | 1113.750 |
% Hydrophobic | % Polar |
---|---|
36.36 | 63.64 |
According to VolSite |
HET Code: | SRO |
---|---|
Formula: | C10H13N2O |
Molecular weight: | 177.223 g/mol |
DrugBank ID: | DB08839 |
Buried Surface Area: | 74.79 % |
Polar Surface area: | 63.66 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 1 |
H-Bond Donors: | 3 |
Rings: | 2 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
37.9052 | -24.1092 | -12.3195 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
CE3 | CB | THR- 29 | 3.94 | 0 | Hydrophobic |
CA | CG2 | THR- 29 | 3.43 | 0 | Hydrophobic |
CZ2 | CB | TYR- 90 | 4.01 | 0 | Hydrophobic |
CE3 | CD1 | ILE- 278 | 4 | 0 | Hydrophobic |
OH | O | THR- 327 | 2.53 | 123.8 | H-Bond (Ligand Donor) |
OH | OG1 | THR- 327 | 3.27 | 147.54 | H-Bond (Ligand Donor) |
NZ | OG1 | THR- 327 | 2.75 | 161.29 | H-Bond (Ligand Donor) |
CA | CB | THR- 327 | 4.46 | 0 | Hydrophobic |
NZ | O | PHE- 344 | 2.88 | 125.7 | H-Bond (Ligand Donor) |
CA | CD2 | PHE- 344 | 3.4 | 0 | Hydrophobic |