2.100 Å
X-ray
2010-11-25
Name: | Glycine betaine/carnitine/choline-binding protein OpuCC |
---|---|
ID: | OPUCC_BACSU |
AC: | O32243 |
Organism: | Bacillus subtilis |
Reign: | Bacteria |
TaxID: | 224308 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 25.430 |
---|---|
Number of residues: | 20 |
Including | |
Standard Amino Acids: | 20 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.324 | 411.750 |
% Hydrophobic | % Polar |
---|---|
36.89 | 63.11 |
According to VolSite |
HET Code: | 4CS |
---|---|
Formula: | C6H10N2O2 |
Molecular weight: | 142.156 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 75.76 % |
Polar Surface area: | 66.13 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 2 |
H-Bond Donors: | 2 |
Rings: | 1 |
Aromatic rings: | 0 |
Anionic atoms: | 1 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 1 |
X | Y | Z |
---|---|---|
15.9086 | 38.7862 | 28.9428 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
OXT | NE2 | GLN- 39 | 2.82 | 165.21 | H-Bond (Protein Donor) |
CB | SD | MET- 41 | 4 | 0 | Hydrophobic |
CB | CD2 | TYR- 91 | 3.39 | 0 | Hydrophobic |
CAD | CB | ASN- 135 | 4.28 | 0 | Hydrophobic |
NAG | O | ASN- 135 | 2.82 | 126.06 | H-Bond (Ligand Donor) |
CAA | CD2 | TYR- 137 | 3.72 | 0 | Hydrophobic |
CAA | CE1 | TYR- 217 | 4.32 | 0 | Hydrophobic |
CAA | CG | TYR- 241 | 3.97 | 0 | Hydrophobic |