1.730 Å
X-ray
2010-11-15
Name: | Endothiapepsin |
---|---|
ID: | CARP_CRYPA |
AC: | P11838 |
Organism: | Cryphonectria parasitica |
Reign: | Eukaryota |
TaxID: | 5116 |
EC Number: | 3.4.23.22 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 16.340 |
---|---|
Number of residues: | 21 |
Including | |
Standard Amino Acids: | 20 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.904 | 776.250 |
% Hydrophobic | % Polar |
---|---|
42.61 | 57.39 |
According to VolSite |
HET Code: | F06 |
---|---|
Formula: | C8H10ClN2S |
Molecular weight: | 201.696 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 53.66 % |
Polar Surface area: | 76.91 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 2 |
H-Bond Donors: | 2 |
Rings: | 1 |
Aromatic rings: | 1 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 3 |
X | Y | Z |
---|---|---|
1.06417 | 8.334 | 9.18717 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
N12 | OD1 | ASP- 35 | 2.94 | 166.76 | H-Bond (Ligand Donor) |
CL2 | CZ | PHE- 194 | 3.6 | 0 | Hydrophobic |
CL2 | CD1 | ILE- 217 | 3.81 | 0 | Hydrophobic |
N12 | OD1 | ASP- 219 | 2.75 | 154.85 | H-Bond (Ligand Donor) |
C4 | CG2 | ILE- 300 | 3.51 | 0 | Hydrophobic |
C3 | CG2 | ILE- 302 | 4.11 | 0 | Hydrophobic |
C8 | CD1 | ILE- 304 | 4.15 | 0 | Hydrophobic |
C7 | CD1 | ILE- 304 | 3.6 | 0 | Hydrophobic |