2.500 Å
X-ray
2010-08-23
Name: | Cap5O |
---|---|
ID: | P95708_STAAU |
AC: | P95708 |
Organism: | Staphylococcus aureus |
Reign: | Bacteria |
TaxID: | 1280 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 80 % |
B | 20 % |
B-Factor: | 56.611 |
---|---|
Number of residues: | 17 |
Including | |
Standard Amino Acids: | 14 |
Non Standard Amino Acids: | 3 |
Water Molecules: | 0 |
Cofactors: | NAD |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.795 | 1545.750 |
% Hydrophobic | % Polar |
---|---|
36.46 | 63.54 |
According to VolSite |
HET Code: | PDC |
---|---|
Formula: | C7H3NO4 |
Molecular weight: | 165.103 g/mol |
DrugBank ID: | DB04267 |
Buried Surface Area: | 44.99 % |
Polar Surface area: | 93.15 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 5 |
H-Bond Donors: | 0 |
Rings: | 1 |
Aromatic rings: | 1 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
5.14608 | 53.8999 | 94.0747 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C3 | CD | ARG- 152 | 3.73 | 0 | Hydrophobic |
C4 | CG | ARG- 152 | 3.58 | 0 | Hydrophobic |
C5 | CB | LEU- 154 | 4.23 | 0 | Hydrophobic |
O1 | NE2 | HIS- 242 | 3.48 | 167.64 | H-Bond (Protein Donor) |
O2 | NE2 | HIS- 242 | 3.05 | 129.88 | H-Bond (Protein Donor) |
O3 | NZ | LYS- 315 | 3.24 | 0 | Ionic (Protein Cationic) |
O4 | NZ | LYS- 315 | 3.09 | 0 | Ionic (Protein Cationic) |
O4 | NZ | LYS- 315 | 3.09 | 146.74 | H-Bond (Protein Donor) |