2.500 Å
X-ray
2010-08-23
| Name: | Cap5O |
|---|---|
| ID: | P95708_STAAU |
| AC: | P95708 |
| Organism: | Staphylococcus aureus |
| Reign: | Bacteria |
| TaxID: | 1280 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 80 % |
| B | 20 % |
| B-Factor: | 56.611 |
|---|---|
| Number of residues: | 17 |
| Including | |
| Standard Amino Acids: | 14 |
| Non Standard Amino Acids: | 3 |
| Water Molecules: | 0 |
| Cofactors: | NAD |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.795 | 1545.750 |
| % Hydrophobic | % Polar |
|---|---|
| 36.46 | 63.54 |
| According to VolSite | |

| HET Code: | PDC |
|---|---|
| Formula: | C7H3NO4 |
| Molecular weight: | 165.103 g/mol |
| DrugBank ID: | DB04267 |
| Buried Surface Area: | 44.99 % |
| Polar Surface area: | 93.15 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 5 |
| H-Bond Donors: | 0 |
| Rings: | 1 |
| Aromatic rings: | 1 |
| Anionic atoms: | 2 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 2 |
| X | Y | Z |
|---|---|---|
| 5.14608 | 53.8999 | 94.0747 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C3 | CD | ARG- 152 | 3.73 | 0 | Hydrophobic |
| C4 | CG | ARG- 152 | 3.58 | 0 | Hydrophobic |
| C5 | CB | LEU- 154 | 4.23 | 0 | Hydrophobic |
| O1 | NE2 | HIS- 242 | 3.48 | 167.64 | H-Bond (Protein Donor) |
| O2 | NE2 | HIS- 242 | 3.05 | 129.88 | H-Bond (Protein Donor) |
| O3 | NZ | LYS- 315 | 3.24 | 0 | Ionic (Protein Cationic) |
| O4 | NZ | LYS- 315 | 3.09 | 0 | Ionic (Protein Cationic) |
| O4 | NZ | LYS- 315 | 3.09 | 146.74 | H-Bond (Protein Donor) |