1.900 Å
X-ray
2010-08-10
Name: | Lipoprotein E |
---|---|
ID: | HEL_HAEIN |
AC: | P26093 |
Organism: | Haemophilus influenzae |
Reign: | Bacteria |
TaxID: | 71421 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 23.938 |
---|---|
Number of residues: | 31 |
Including | |
Standard Amino Acids: | 29 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 1 |
Cofactors: | |
Metals: | MG |
Ligandability | Volume (Å3) |
---|---|
0.870 | 1113.750 |
% Hydrophobic | % Polar |
---|---|
46.67 | 53.33 |
According to VolSite |
HET Code: | 2AM |
---|---|
Formula: | C10H12N5O7P |
Molecular weight: | 345.205 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 53.79 % |
Polar Surface area: | 201.54 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 11 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 4 |
X | Y | Z |
---|---|---|
46.6854 | -13.5058 | -8.44774 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O1P | ND2 | ASN- 66 | 3.46 | 135.34 | H-Bond (Protein Donor) |
O3' | ND2 | ASN- 66 | 3.15 | 126.33 | H-Bond (Protein Donor) |
O2' | ND2 | ASN- 66 | 2.98 | 158.11 | H-Bond (Protein Donor) |
DuAr | DuAr | PHE- 86 | 3.59 | 0 | Aromatic Face/Face |
C5' | CZ | PHE- 86 | 3.92 | 0 | Hydrophobic |
C1' | CZ2 | TRP- 91 | 3.93 | 0 | Hydrophobic |
O1P | N | ASN- 125 | 3.15 | 138.03 | H-Bond (Protein Donor) |
C3' | CB | ASN- 125 | 4.02 | 0 | Hydrophobic |
DuAr | DuAr | TYR- 221 | 3.93 | 0 | Aromatic Face/Face |
C2' | CE1 | TYR- 221 | 4.19 | 0 | Hydrophobic |
O3P | MG | MG- 264 | 2.16 | 0 | Metal Acceptor |
O1P | O | HOH- 358 | 2.62 | 155.71 | H-Bond (Protein Donor) |