3.000 Å
X-ray
2010-07-16
Name: | Arginine decarboxylase |
---|---|
ID: | Q0PAC6_CAMJE |
AC: | Q0PAC6 |
Organism: | Campylobacter jejuni subsp. jejuni serotype O:2 |
Reign: | Bacteria |
TaxID: | 192222 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 7 % |
B | 93 % |
B-Factor: | 41.590 |
---|---|
Number of residues: | 27 |
Including | |
Standard Amino Acids: | 27 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.080 | 580.500 |
% Hydrophobic | % Polar |
---|---|
40.70 | 59.30 |
According to VolSite |
HET Code: | PLP |
---|---|
Formula: | C8H8NO6P |
Molecular weight: | 245.126 g/mol |
DrugBank ID: | DB00114 |
Buried Surface Area: | 78.71 % |
Polar Surface area: | 132.42 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 7 |
H-Bond Donors: | 1 |
Rings: | 1 |
Aromatic rings: | 1 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 4 |
X | Y | Z |
---|---|---|
-31.1905 | 100.781 | -14.5817 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C5 | CB | PRO- 84 | 4.01 | 0 | Hydrophobic |
C5A | CG | PRO- 84 | 3.63 | 0 | Hydrophobic |
C4 | CG | LYS- 86 | 4.43 | 0 | Hydrophobic |
C4A | CD | LYS- 86 | 3.3 | 0 | Hydrophobic |
C5A | CG1 | VAL- 87 | 4.3 | 0 | Hydrophobic |
C2A | CB | ASN- 132 | 4.22 | 0 | Hydrophobic |
C2A | CB | HIS- 233 | 4.21 | 0 | Hydrophobic |
DuAr | DuAr | HIS- 233 | 3.76 | 0 | Aromatic Face/Face |
O3P | OG | SER- 236 | 2.91 | 147.89 | H-Bond (Protein Donor) |
O1P | N | GLY- 274 | 3.02 | 152.63 | H-Bond (Protein Donor) |
N1 | OE1 | GLU- 320 | 2.89 | 141.94 | H-Bond (Ligand Donor) |
O2P | N | ARG- 323 | 2.74 | 161.37 | H-Bond (Protein Donor) |
O3P | OH | TYR- 519 | 2.59 | 152.31 | H-Bond (Protein Donor) |