2.730 Å
X-ray
2010-06-22
Name: | Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase |
---|---|
ID: | FLPA_PYRFU |
AC: | Q8U4M2 |
Organism: | Pyrococcus furiosus |
Reign: | Archaea |
TaxID: | 186497 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 15 % |
G | 3 % |
F | 82 % |
B-Factor: | 68.630 |
---|---|
Number of residues: | 33 |
Including | |
Standard Amino Acids: | 33 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.838 | 1620.000 |
% Hydrophobic | % Polar |
---|---|
31.88 | 68.13 |
According to VolSite |
HET Code: | SAM |
---|---|
Formula: | C15H23N6O5S |
Molecular weight: | 399.445 g/mol |
DrugBank ID: | DB00118 |
Buried Surface Area: | 57.74 % |
Polar Surface area: | 189.77 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 9 |
H-Bond Donors: | 4 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 1 |
Cationic atoms: | 2 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 7 |
X | Y | Z |
---|---|---|
58.2623 | 2.96812 | -20.9852 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O | NZ | LYS- 57 | 3.45 | 133.96 | H-Bond (Protein Donor) |
CE | CB | ALA- 83 | 3.55 | 0 | Hydrophobic |
C4' | CB | ALA- 83 | 4.33 | 0 | Hydrophobic |
O3' | OE1 | GLU- 105 | 3.19 | 167.06 | H-Bond (Ligand Donor) |
N3 | N | PHE- 106 | 3.27 | 142.02 | H-Bond (Protein Donor) |
N6 | OD1 | ASP- 130 | 3.42 | 138.81 | H-Bond (Ligand Donor) |
N1 | N | ALA- 131 | 2.81 | 157.81 | H-Bond (Protein Donor) |
C3' | CB | GLU- 352 | 3.93 | 0 | Hydrophobic |
C2' | CB | TYR- 353 | 4.31 | 0 | Hydrophobic |
O2' | N | TYR- 353 | 3.25 | 149.11 | H-Bond (Protein Donor) |