2.500 Å
X-ray
2010-05-28
| Name: | 3-dehydroquinate dehydratase |
|---|---|
| ID: | AROQ_MYCTU |
| AC: | P9WPX7 |
| Organism: | Mycobacterium tuberculosis |
| Reign: | Bacteria |
| TaxID: | 83332 |
| EC Number: | 4.2.1.10 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| I | 17 % |
| J | 83 % |
| B-Factor: | 16.723 |
|---|---|
| Number of residues: | 31 |
| Including | |
| Standard Amino Acids: | 31 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.770 | 604.125 |
| % Hydrophobic | % Polar |
|---|---|
| 43.02 | 56.98 |
| According to VolSite | |

| HET Code: | N88 |
|---|---|
| Formula: | C12H18NO6 |
| Molecular weight: | 272.274 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 65.13 % |
| Polar Surface area: | 129.92 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 6 |
| H-Bond Donors: | 4 |
| Rings: | 1 |
| Aromatic rings: | 0 |
| Anionic atoms: | 1 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 3 |
| X | Y | Z |
|---|---|---|
| -18.7152 | 29.1522 | 52.4046 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C16 | CB | ASN- 12 | 3.68 | 0 | Hydrophobic |
| C17 | CD2 | LEU- 16 | 4.26 | 0 | Hydrophobic |
| O3 | NE2 | HIS- 81 | 2.71 | 152.04 | H-Bond (Ligand Donor) |
| C16 | CB | ASP- 88 | 4.11 | 0 | Hydrophobic |
| O1 | N | SER- 103 | 2.98 | 134.57 | H-Bond (Protein Donor) |
| O2 | N | SER- 103 | 3.33 | 147.14 | H-Bond (Protein Donor) |
| C2 | CG1 | VAL- 105 | 3.68 | 0 | Hydrophobic |
| O3 | NH1 | ARG- 112 | 3.43 | 159.58 | H-Bond (Protein Donor) |