1.900 Å
X-ray
2010-05-24
Name: | Nitrogen regulatory protein P-II |
---|---|
ID: | Q9L422_NOSS1 |
AC: | Q9L422 |
Organism: | Nostoc sp. |
Reign: | Bacteria |
TaxID: | 103690 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 34.486 |
---|---|
Number of residues: | 19 |
Including | |
Standard Amino Acids: | 19 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.807 | 448.875 |
% Hydrophobic | % Polar |
---|---|
54.14 | 45.86 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 45.25 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
28.5895 | 7.09726 | 31.4069 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C4' | CG2 | ILE- 7 | 4.36 | 0 | Hydrophobic |
C1' | CG2 | ILE- 7 | 4.44 | 0 | Hydrophobic |
O2A | N | ARG- 38 | 3.04 | 166.21 | H-Bond (Protein Donor) |
O1A | N | GLN- 39 | 2.96 | 166.42 | H-Bond (Protein Donor) |
O2B | N | GLY- 87 | 2.98 | 164.79 | H-Bond (Protein Donor) |
O3A | N | GLY- 87 | 3.03 | 122.17 | H-Bond (Protein Donor) |
O1B | NZ | LYS- 90 | 3.77 | 0 | Ionic (Protein Cationic) |
O3B | NZ | LYS- 90 | 2.95 | 0 | Ionic (Protein Cationic) |
O3B | NZ | LYS- 90 | 2.95 | 146.43 | H-Bond (Protein Donor) |
C1' | CD | LYS- 90 | 4.21 | 0 | Hydrophobic |