1.600 Å
X-ray
2010-05-14
Name: | Adenylate cyclase 2 |
---|---|
ID: | Q7CH76_YERPE |
AC: | Q7CH76 |
Organism: | Yersinia pestis |
Reign: | Bacteria |
TaxID: | 632 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 26.049 |
---|---|
Number of residues: | 29 |
Including | |
Standard Amino Acids: | 28 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | MN |
Ligandability | Volume (Å3) |
---|---|
0.893 | 1161.000 |
% Hydrophobic | % Polar |
---|---|
38.37 | 61.63 |
According to VolSite |
HET Code: | CMP |
---|---|
Formula: | C10H11N5O6P |
Molecular weight: | 328.198 g/mol |
DrugBank ID: | DB02527 |
Buried Surface Area: | 69 % |
Polar Surface area: | 167.48 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 10 |
H-Bond Donors: | 2 |
Rings: | 4 |
Aromatic rings: | 2 |
Anionic atoms: | 1 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 1 |
X | Y | Z |
---|---|---|
9.447 | 0.0945909 | 40.6153 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C2' | CD2 | PHE- 5 | 3.72 | 0 | Hydrophobic |
O1P | NH1 | ARG- 63 | 2.88 | 158.56 | H-Bond (Protein Donor) |
O1P | NH2 | ARG- 63 | 3.29 | 135.44 | H-Bond (Protein Donor) |
C5' | CD1 | ILE- 74 | 3.48 | 0 | Hydrophobic |
C4' | SG | CYS- 83 | 4.03 | 0 | Hydrophobic |
C1' | CB | ALA- 85 | 4.36 | 0 | Hydrophobic |
O1P | NH1 | ARG- 113 | 3.21 | 128.8 | H-Bond (Protein Donor) |
C1' | SD | MET- 140 | 4.07 | 0 | Hydrophobic |
O3' | MN | MN- 183 | 2.4 | 0 | Metal Acceptor |
O2' | MN | MN- 183 | 2.49 | 0 | Metal Acceptor |