1.950 Å
X-ray
2010-05-11
| Name: | High affinity transport system protein p37 |
|---|---|
| ID: | P37_MYCGE |
| AC: | Q49410 |
| Organism: | Mycoplasma genitalium |
| Reign: | Bacteria |
| TaxID: | 243273 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 35.356 |
|---|---|
| Number of residues: | 29 |
| Including | |
| Standard Amino Acids: | 28 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.395 | 793.125 |
| % Hydrophobic | % Polar |
|---|---|
| 27.66 | 72.34 |
| According to VolSite | |

| HET Code: | VIB |
|---|---|
| Formula: | C12H17N4OS |
| Molecular weight: | 265.355 g/mol |
| DrugBank ID: | DB00152 |
| Buried Surface Area: | 62.42 % |
| Polar Surface area: | 104.15 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 4 |
| H-Bond Donors: | 2 |
| Rings: | 2 |
| Aromatic rings: | 2 |
| Anionic atoms: | 0 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 4 |
| X | Y | Z |
|---|---|---|
| 4.07433 | 30.7082 | 33.7392 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| N4A | OD2 | ASP- 41 | 2.92 | 154.1 | H-Bond (Ligand Donor) |
| CM2 | CB | ASN- 161 | 4.24 | 0 | Hydrophobic |
| CM4 | CD1 | TYR- 176 | 4.11 | 0 | Hydrophobic |
| C7 | CZ | TYR- 176 | 3.7 | 0 | Hydrophobic |
| C6 | CE2 | TYR- 176 | 3.81 | 0 | Hydrophobic |
| CM4 | CB | ASP- 269 | 4.14 | 0 | Hydrophobic |
| CM2 | CB | TRP- 275 | 3.74 | 0 | Hydrophobic |
| CM4 | CH2 | TRP- 275 | 4.24 | 0 | Hydrophobic |
| DuAr | DuAr | TRP- 275 | 3.97 | 0 | Aromatic Face/Face |
| CM4 | CZ | TYR- 307 | 4.37 | 0 | Hydrophobic |
| C6 | CE1 | TYR- 307 | 3.79 | 0 | Hydrophobic |
| S1 | CG1 | ILE- 343 | 4.49 | 0 | Hydrophobic |