1.950 Å
X-ray
2010-05-11
Name: | High affinity transport system protein p37 |
---|---|
ID: | P37_MYCGE |
AC: | Q49410 |
Organism: | Mycoplasma genitalium |
Reign: | Bacteria |
TaxID: | 243273 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 35.356 |
---|---|
Number of residues: | 29 |
Including | |
Standard Amino Acids: | 28 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.395 | 793.125 |
% Hydrophobic | % Polar |
---|---|
27.66 | 72.34 |
According to VolSite |
HET Code: | VIB |
---|---|
Formula: | C12H17N4OS |
Molecular weight: | 265.355 g/mol |
DrugBank ID: | DB00152 |
Buried Surface Area: | 62.42 % |
Polar Surface area: | 104.15 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 4 |
H-Bond Donors: | 2 |
Rings: | 2 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 4 |
X | Y | Z |
---|---|---|
4.07433 | 30.7082 | 33.7392 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
N4A | OD2 | ASP- 41 | 2.92 | 154.1 | H-Bond (Ligand Donor) |
CM2 | CB | ASN- 161 | 4.24 | 0 | Hydrophobic |
CM4 | CD1 | TYR- 176 | 4.11 | 0 | Hydrophobic |
C7 | CZ | TYR- 176 | 3.7 | 0 | Hydrophobic |
C6 | CE2 | TYR- 176 | 3.81 | 0 | Hydrophobic |
CM4 | CB | ASP- 269 | 4.14 | 0 | Hydrophobic |
CM2 | CB | TRP- 275 | 3.74 | 0 | Hydrophobic |
CM4 | CH2 | TRP- 275 | 4.24 | 0 | Hydrophobic |
DuAr | DuAr | TRP- 275 | 3.97 | 0 | Aromatic Face/Face |
CM4 | CZ | TYR- 307 | 4.37 | 0 | Hydrophobic |
C6 | CE1 | TYR- 307 | 3.79 | 0 | Hydrophobic |
S1 | CG1 | ILE- 343 | 4.49 | 0 | Hydrophobic |