2.700 Å
X-ray
2009-12-28
Name: | Xaa-Pro dipeptidase |
---|---|
ID: | PEPQ_ALTSX |
AC: | Q44238 |
Organism: | Alteromonas sp |
Reign: | Bacteria |
TaxID: | 232 |
EC Number: | 3.4.13.9 |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 29.038 |
---|---|
Number of residues: | 21 |
Including | |
Standard Amino Acids: | 19 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | MN MN |
Ligandability | Volume (Å3) |
---|---|
0.293 | 418.500 |
% Hydrophobic | % Polar |
---|---|
45.16 | 54.84 |
According to VolSite |
HET Code: | M44 |
---|---|
Formula: | C6H16N2O2P |
Molecular weight: | 179.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 59.69 % |
Polar Surface area: | 74 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 2 |
H-Bond Donors: | 2 |
Rings: | 0 |
Aromatic rings: | 0 |
Anionic atoms: | 1 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 4 |
X | Y | Z |
---|---|---|
32.393 | 72.7889 | 34.2521 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C2 | CE2 | TYR- 212 | 3.66 | 0 | Hydrophobic |
C3 | CD2 | TYR- 212 | 4.24 | 0 | Hydrophobic |
C3 | CD1 | ILE- 215 | 4.02 | 0 | Hydrophobic |
C6 | CB | HIS- 332 | 3.81 | 0 | Hydrophobic |
C2 | CG1 | VAL- 342 | 3.79 | 0 | Hydrophobic |
O2 | NE2 | HIS- 343 | 3 | 162.68 | H-Bond (Protein Donor) |
N2 | OE1 | GLU- 381 | 2.54 | 138.17 | H-Bond (Ligand Donor) |
O1 | MN | MN- 519 | 1.84 | 0 | Metal Acceptor |
O1 | MN | MN- 520 | 2.24 | 0 | Metal Acceptor |