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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Protein Data Bank Entry:

3jwe

2.700 Å

X-ray

2009-09-18

Interactomes:
Molecular Function:
Binding Site :

Uniprot Annotation

Name:Monoglyceride lipase
ID:MGLL_HUMAN
AC:Q99685
Organism:Homo sapiens
Reign:Eukaryota
TaxID:9606
EC Number:/


Chains:

Chain Name:Percentage of Residues
within binding site
B100 %


Ligand binding site composition:

B-Factor:36.368
Number of residues:32
Including
Standard Amino Acids: 31
Non Standard Amino Acids: 1
Water Molecules: 0
Cofactors:
Metals:

Cavity properties

LigandabilityVolume (Å3)
1.272374.625

% Hydrophobic% Polar
60.3639.64
According to VolSite

Ligand :
3jwe_1 Structure
HET Code: F4P
Formula: C20H20F2N5O
Molecular weight: 384.402 g/mol
DrugBank ID: -
Buried Surface Area:60.39 %
Polar Surface area: 55.46 Å2
Number of
H-Bond Acceptors: 3
H-Bond Donors: 1
Rings: 4
Aromatic rings: 3
Anionic atoms: 0
Cationic atoms: 1
Rule of Five Violation: 0
Rotatable Bonds: 3

Mass center Coordinates

XYZ
7.7958211.965911.1803


Binding mode :
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Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
O3NASN- 1622.84157.61H-Bond
(Protein Donor)
C15CG2VAL- 1714.320Hydrophobic
F28CG2VAL- 1713.910Hydrophobic
C15CBALA- 1743.570Hydrophobic
C14CBALA- 1743.490Hydrophobic
C17CD1LEU- 1863.710Hydrophobic
F27CBLEU- 1863.390Hydrophobic
C18CD1LEU- 1863.590Hydrophobic
C21CD2LEU- 1863.640Hydrophobic
C20CD2LEU- 2153.920Hydrophobic
F27CG2VAL- 2173.850Hydrophobic
F28CG1ILE- 2213.860Hydrophobic
C14CD1LEU- 2243.40Hydrophobic
C14CD1LEU- 2243.40Hydrophobic