2.200 Å
X-ray
2009-08-25
Name: | Putative dipeptidase |
---|---|
ID: | Q93J45_STRCO |
AC: | Q93J45 |
Organism: | Streptomyces coelicolor / M145) |
Reign: | Bacteria |
TaxID: | 100226 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
X | 100 % |
B-Factor: | 23.350 |
---|---|
Number of residues: | 25 |
Including | |
Standard Amino Acids: | 21 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 2 |
Cofactors: | |
Metals: | ZN ZN |
Ligandability | Volume (Å3) |
---|---|
0.803 | 1042.875 |
% Hydrophobic | % Polar |
---|---|
32.04 | 67.96 |
According to VolSite |
HET Code: | B88 |
---|---|
Formula: | C7H12NO6P |
Molecular weight: | 237.147 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 66.99 % |
Polar Surface area: | 157.84 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 6 |
H-Bond Donors: | 1 |
Rings: | 0 |
Aromatic rings: | 0 |
Anionic atoms: | 3 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
-12.9814 | 38.4923 | -4.17053 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C12 | CE1 | TYR- 68 | 4.26 | 0 | Hydrophobic |
O4 | NE2 | HIS- 150 | 2.99 | 126.56 | H-Bond (Protein Donor) |
O5 | NE2 | HIS- 150 | 2.82 | 153.97 | H-Bond (Protein Donor) |
O1 | NH1 | ARG- 223 | 3.19 | 161.45 | H-Bond (Protein Donor) |
O6 | NE | ARG- 223 | 3.1 | 166.91 | H-Bond (Protein Donor) |
O6 | CZ | ARG- 223 | 3.78 | 0 | Ionic (Protein Cationic) |
O3 | NZ | LYS- 247 | 3.02 | 140.65 | H-Bond (Protein Donor) |
O3 | NZ | LYS- 247 | 3.02 | 0 | Ionic (Protein Cationic) |
C13 | CZ | PHE- 248 | 3.74 | 0 | Hydrophobic |
O5 | ZN | ZN- 3001 | 2.2 | 0 | Metal Acceptor |
O1 | ZN | ZN- 3001 | 2.38 | 0 | Metal Acceptor |