2.200 Å
X-ray
2009-08-25
| Name: | Putative dipeptidase |
|---|---|
| ID: | Q93J45_STRCO |
| AC: | Q93J45 |
| Organism: | Streptomyces coelicolor / M145) |
| Reign: | Bacteria |
| TaxID: | 100226 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| X | 100 % |
| B-Factor: | 23.350 |
|---|---|
| Number of residues: | 25 |
| Including | |
| Standard Amino Acids: | 21 |
| Non Standard Amino Acids: | 2 |
| Water Molecules: | 2 |
| Cofactors: | |
| Metals: | ZN ZN |
| Ligandability | Volume (Å3) |
|---|---|
| 0.803 | 1042.875 |
| % Hydrophobic | % Polar |
|---|---|
| 32.04 | 67.96 |
| According to VolSite | |

| HET Code: | B88 |
|---|---|
| Formula: | C7H12NO6P |
| Molecular weight: | 237.147 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 66.99 % |
| Polar Surface area: | 157.84 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 6 |
| H-Bond Donors: | 1 |
| Rings: | 0 |
| Aromatic rings: | 0 |
| Anionic atoms: | 3 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| -12.9814 | 38.4923 | -4.17053 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C12 | CE1 | TYR- 68 | 4.26 | 0 | Hydrophobic |
| O4 | NE2 | HIS- 150 | 2.99 | 126.56 | H-Bond (Protein Donor) |
| O5 | NE2 | HIS- 150 | 2.82 | 153.97 | H-Bond (Protein Donor) |
| O1 | NH1 | ARG- 223 | 3.19 | 161.45 | H-Bond (Protein Donor) |
| O6 | NE | ARG- 223 | 3.1 | 166.91 | H-Bond (Protein Donor) |
| O6 | CZ | ARG- 223 | 3.78 | 0 | Ionic (Protein Cationic) |
| O3 | NZ | LYS- 247 | 3.02 | 140.65 | H-Bond (Protein Donor) |
| O3 | NZ | LYS- 247 | 3.02 | 0 | Ionic (Protein Cationic) |
| C13 | CZ | PHE- 248 | 3.74 | 0 | Hydrophobic |
| O5 | ZN | ZN- 3001 | 2.2 | 0 | Metal Acceptor |
| O1 | ZN | ZN- 3001 | 2.38 | 0 | Metal Acceptor |