3.000 Å
X-ray
2009-07-30
| Name: | Uncharacterized protein |
|---|---|
| ID: | Q8DVV9_STRMU |
| AC: | Q8DVV9 |
| Organism: | Streptococcus mutans serotype c |
| Reign: | Bacteria |
| TaxID: | 210007 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 49 % |
| C | 51 % |
| B-Factor: | 46.721 |
|---|---|
| Number of residues: | 37 |
| Including | |
| Standard Amino Acids: | 35 |
| Non Standard Amino Acids: | 2 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | MG MG |
| Ligandability | Volume (Å3) |
|---|---|
| 0.998 | 1353.375 |
| % Hydrophobic | % Polar |
|---|---|
| 28.43 | 71.57 |
| According to VolSite | |

| HET Code: | TPP |
|---|---|
| Formula: | C12H16N4O7P2S |
| Molecular weight: | 422.291 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 64.36 % |
| Polar Surface area: | 225.32 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 10 |
| H-Bond Donors: | 1 |
| Rings: | 2 |
| Aromatic rings: | 2 |
| Anionic atoms: | 3 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| 12.3199 | 52.1087 | 33.4967 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C6 | CG | LYS- 71 | 4.23 | 0 | Hydrophobic |
| N4' | OD1 | ASN- 72 | 3.16 | 145.47 | H-Bond (Ligand Donor) |
| O2A | N | ASP- 75 | 3.23 | 171.61 | H-Bond (Protein Donor) |
| O1B | CZ | ARG- 101 | 3.62 | 0 | Ionic (Protein Cationic) |
| O1B | NH2 | ARG- 101 | 2.67 | 127.28 | H-Bond (Protein Donor) |
| O1A | NE2 | HIS- 104 | 2.64 | 123.65 | H-Bond (Protein Donor) |
| O1B | NE2 | HIS- 104 | 2.64 | 127.98 | H-Bond (Protein Donor) |
| CM2 | CB | TYR- 169 | 4.39 | 0 | Hydrophobic |
| C7' | CD2 | TYR- 169 | 3.39 | 0 | Hydrophobic |
| CM4 | CZ | TYR- 169 | 3.66 | 0 | Hydrophobic |
| CM2 | CB | LEU- 171 | 3.74 | 0 | Hydrophobic |
| CM2 | CZ | PHE- 177 | 4.18 | 0 | Hydrophobic |
| CM2 | CB | TYR- 182 | 4.36 | 0 | Hydrophobic |
| C7' | CB | SER- 184 | 4.49 | 0 | Hydrophobic |
| CM4 | CB | SER- 184 | 4.08 | 0 | Hydrophobic |
| C7 | CB | SER- 184 | 4.11 | 0 | Hydrophobic |
| O1B | OG | SER- 184 | 3.11 | 149.19 | H-Bond (Protein Donor) |