3.000 Å
X-ray
2009-07-06
| Name: | 2,7-dihydroxy-5-methyl-1-naphthoate 7-O-methyltransferase |
|---|---|
| ID: | NCSB1_STRCZ |
| AC: | Q84HC8 |
| Organism: | Streptomyces carzinostaticus |
| Reign: | Bacteria |
| TaxID: | 1897 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 96 % |
| B | 4 % |
| B-Factor: | 63.972 |
|---|---|
| Number of residues: | 22 |
| Including | |
| Standard Amino Acids: | 22 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.687 | 752.625 |
| % Hydrophobic | % Polar |
|---|---|
| 52.47 | 47.53 |
| According to VolSite | |

| HET Code: | DNA |
|---|---|
| Formula: | C11H7O4 |
| Molecular weight: | 203.171 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 71.57 % |
| Polar Surface area: | 80.59 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 4 |
| H-Bond Donors: | 2 |
| Rings: | 2 |
| Aromatic rings: | 2 |
| Anionic atoms: | 1 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 1 |
| X | Y | Z |
|---|---|---|
| -40.541 | 32.2506 | -7.2572 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C1H | CG2 | VAL- 103 | 4.05 | 0 | Hydrophobic |
| C1I | SD | MET- 150 | 3.53 | 0 | Hydrophobic |
| C1M | CE | MET- 150 | 3.66 | 0 | Hydrophobic |
| C1O | CE | MET- 150 | 3.81 | 0 | Hydrophobic |
| O1C | O | ALA- 243 | 3.43 | 151.43 | H-Bond (Ligand Donor) |
| C1I | CB | ALA- 243 | 4.5 | 0 | Hydrophobic |
| C1M | SD | MET- 286 | 4.43 | 0 | Hydrophobic |
| C1H | CD | ARG- 289 | 3.71 | 0 | Hydrophobic |
| C1N | CE | MET- 290 | 3.83 | 0 | Hydrophobic |
| C1O | CE | MET- 290 | 3.79 | 0 | Hydrophobic |
| C1G | CE | MET- 290 | 4.05 | 0 | Hydrophobic |
| C1F | CE2 | TYR- 293 | 3.4 | 0 | Hydrophobic |
| C1E | CZ | PHE- 294 | 3.37 | 0 | Hydrophobic |