2.100 Å
X-ray
2009-03-11
Name: | DdmC |
---|---|
ID: | Q5S3I3_STEMA |
AC: | Q5S3I3 |
Organism: | Stenotrophomonas maltophilia |
Reign: | Bacteria |
TaxID: | 40324 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 68.249 |
---|---|
Number of residues: | 28 |
Including | |
Standard Amino Acids: | 27 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | FE |
Ligandability | Volume (Å3) |
---|---|
1.247 | 550.125 |
% Hydrophobic | % Polar |
---|---|
57.67 | 42.33 |
According to VolSite |
HET Code: | D3M |
---|---|
Formula: | C8H5Cl2O3 |
Molecular weight: | 220.030 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 56.8 % |
Polar Surface area: | 49.36 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 3 |
H-Bond Donors: | 0 |
Rings: | 1 |
Aromatic rings: | 1 |
Anionic atoms: | 1 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
23.7642 | 2.94669 | -36.5979 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
CL1 | CD2 | LEU- 158 | 4.21 | 0 | Hydrophobic |
C8 | CD2 | LEU- 158 | 3.95 | 0 | Hydrophobic |
C3 | CD1 | LEU- 202 | 3.25 | 0 | Hydrophobic |
C3 | CE | MET- 203 | 4.2 | 0 | Hydrophobic |
O2 | ND2 | ASN- 230 | 3.05 | 153.85 | H-Bond (Protein Donor) |
C3 | CG2 | ILE- 232 | 3.85 | 0 | Hydrophobic |
C5 | CD1 | ILE- 232 | 3.78 | 0 | Hydrophobic |
C1 | CG1 | ILE- 232 | 4.16 | 0 | Hydrophobic |
O2 | NE2 | HIS- 251 | 2.86 | 163.09 | H-Bond (Protein Donor) |
CL2 | CD2 | LEU- 282 | 4 | 0 | Hydrophobic |
CL2 | CE2 | TRP- 285 | 4.4 | 0 | Hydrophobic |
C8 | CZ2 | TRP- 285 | 4.26 | 0 | Hydrophobic |
O1 | NE1 | TRP- 285 | 2.88 | 152.07 | H-Bond (Protein Donor) |
C8 | CD2 | LEU- 290 | 3.97 | 0 | Hydrophobic |