2.050 Å
X-ray
2009-02-18
Name: | DdmC |
---|---|
ID: | Q5S3I3_STEMA |
AC: | Q5S3I3 |
Organism: | Stenotrophomonas maltophilia |
Reign: | Bacteria |
TaxID: | 40324 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 43.733 |
---|---|
Number of residues: | 29 |
Including | |
Standard Amino Acids: | 29 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.492 | 506.250 |
% Hydrophobic | % Polar |
---|---|
61.33 | 38.67 |
According to VolSite |
HET Code: | D3M |
---|---|
Formula: | C8H5Cl2O3 |
Molecular weight: | 220.030 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 60.28 % |
Polar Surface area: | 49.36 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 3 |
H-Bond Donors: | 0 |
Rings: | 1 |
Aromatic rings: | 1 |
Anionic atoms: | 1 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
-55.2114 | -50.9282 | 5.60754 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C8 | CD2 | LEU- 155 | 4.46 | 0 | Hydrophobic |
CL1 | CD1 | LEU- 158 | 3.65 | 0 | Hydrophobic |
C8 | CD1 | LEU- 158 | 4.17 | 0 | Hydrophobic |
C3 | CD2 | LEU- 202 | 3.65 | 0 | Hydrophobic |
C3 | CE | MET- 203 | 4.32 | 0 | Hydrophobic |
CL2 | CZ | PHE- 206 | 3.99 | 0 | Hydrophobic |
O2 | ND2 | ASN- 230 | 2.9 | 172.63 | H-Bond (Protein Donor) |
C6 | CD1 | ILE- 232 | 4.13 | 0 | Hydrophobic |
C2 | CG1 | ILE- 232 | 3.97 | 0 | Hydrophobic |
C5 | CD1 | ILE- 232 | 3.77 | 0 | Hydrophobic |
O2 | NE2 | HIS- 251 | 2.95 | 170.88 | H-Bond (Protein Donor) |
CL2 | CD2 | LEU- 282 | 3.85 | 0 | Hydrophobic |
CL2 | CE2 | TRP- 285 | 4.16 | 0 | Hydrophobic |
C8 | CZ2 | TRP- 285 | 4.3 | 0 | Hydrophobic |
O1 | NE1 | TRP- 285 | 2.95 | 160.15 | H-Bond (Protein Donor) |
C8 | CD1 | LEU- 290 | 4.11 | 0 | Hydrophobic |