scPDB - 3fnl entry

Protein Data Bank Entry:

PDB ID : 3fnl

Resolution :2.480 Å

Experimental Method : X-ray

Deposition Date : 2008-12-25

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Lactoperoxidase
ID:	PERL_BUBBU
AC:	A5JUY8
Organism:	Bubalus bubalis
Reign:	Eukaryota
TaxID:	89462
EC Number:	/

Chains:

Chain Name:	Percentage of Residues within binding site
A	100 %

Ligand binding site composition:

B-Factor:	28.907
Number of residues:	17
Including
Standard Amino Acids:	16
Non Standard Amino Acids:	1
Water Molecules:	0
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
0.762	1032.750

% Hydrophobic	% Polar
43.46	56.54
According to VolSite

Ligand :

HET Code:	SHA
Formula:	C7H7NO3
Molecular weight:	153.135 g/mol
DrugBank ID:	DB03819
Buried Surface Area:	63.77 %
Polar Surface area:	69.56 Å2

Number of
H-Bond Acceptors:	3
H-Bond Donors:	3
Rings:	1
Aromatic rings:	1
Anionic atoms:	0
Cationic atoms:	0
Rule of Five Violation:	0
Rotatable Bonds:	1

Mass center Coordinates

X	Y	Z
5.13127	2.71364	29.0605

Binding mode :

What is Poseview ?

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Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
O9	NE2	GLN- 105	3.14	175.63	H-Bond (Protein Donor)	false
O9	NE2	HIS- 109	2.52	152.2	H-Bond (Protein Donor)	false
C4	CG	ARG- 255	3.8	0	Hydrophobic	false
C6	CD	ARG- 255	3.48	0	Hydrophobic	false
C2	CG	GLU- 258	3.78	0	Hydrophobic	false