2.100 Å
X-ray
2008-10-16
| Name: | Beta-secretase 1 |
|---|---|
| ID: | BACE1_HUMAN |
| AC: | P56817 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | 3.4.23.46 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 18.717 |
|---|---|
| Number of residues: | 28 |
| Including | |
| Standard Amino Acids: | 26 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 2 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.653 | 911.250 |
| % Hydrophobic | % Polar |
|---|---|
| 31.11 | 68.89 |
| According to VolSite | |

| HET Code: | 5MS |
|---|---|
| Formula: | C18H18N4O2S |
| Molecular weight: | 354.426 g/mol |
| DrugBank ID: | DB07175 |
| Buried Surface Area: | 53.7 % |
| Polar Surface area: | 92.35 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 5 |
| H-Bond Donors: | 2 |
| Rings: | 3 |
| Aromatic rings: | 3 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 5 |
| X | Y | Z |
|---|---|---|
| 34.3918 | 44.2104 | -0.90024 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C | CD2 | LEU- 30 | 3.83 | 0 | Hydrophobic |
| C5 | CD2 | LEU- 30 | 3.62 | 0 | Hydrophobic |
| C18 | CE1 | TYR- 71 | 4.47 | 0 | Hydrophobic |
| C14 | CG | LYS- 107 | 3.87 | 0 | Hydrophobic |
| C12 | CB | LYS- 107 | 4.2 | 0 | Hydrophobic |
| N | O | PHE- 108 | 2.77 | 168.12 | H-Bond (Ligand Donor) |
| C4 | CD1 | ILE- 110 | 4.16 | 0 | Hydrophobic |
| C7 | CG1 | ILE- 110 | 3.47 | 0 | Hydrophobic |
| C18 | CD1 | ILE- 118 | 3.8 | 0 | Hydrophobic |