2.100 Å
X-ray
2008-10-16
Name: | Beta-secretase 1 |
---|---|
ID: | BACE1_HUMAN |
AC: | P56817 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 3.4.23.46 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 18.717 |
---|---|
Number of residues: | 28 |
Including | |
Standard Amino Acids: | 26 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.653 | 911.250 |
% Hydrophobic | % Polar |
---|---|
31.11 | 68.89 |
According to VolSite |
HET Code: | 5MS |
---|---|
Formula: | C18H18N4O2S |
Molecular weight: | 354.426 g/mol |
DrugBank ID: | DB07175 |
Buried Surface Area: | 53.7 % |
Polar Surface area: | 92.35 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 5 |
H-Bond Donors: | 2 |
Rings: | 3 |
Aromatic rings: | 3 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 5 |
X | Y | Z |
---|---|---|
34.3918 | 44.2104 | -0.90024 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C | CD2 | LEU- 30 | 3.83 | 0 | Hydrophobic |
C5 | CD2 | LEU- 30 | 3.62 | 0 | Hydrophobic |
C18 | CE1 | TYR- 71 | 4.47 | 0 | Hydrophobic |
C14 | CG | LYS- 107 | 3.87 | 0 | Hydrophobic |
C12 | CB | LYS- 107 | 4.2 | 0 | Hydrophobic |
N | O | PHE- 108 | 2.77 | 168.12 | H-Bond (Ligand Donor) |
C4 | CD1 | ILE- 110 | 4.16 | 0 | Hydrophobic |
C7 | CG1 | ILE- 110 | 3.47 | 0 | Hydrophobic |
C18 | CD1 | ILE- 118 | 3.8 | 0 | Hydrophobic |