2.550 Å
X-ray
2008-09-28
Name: | Glutaryl-CoA dehydrogenase |
---|---|
ID: | Q3JP94_BURP1 |
AC: | Q3JP94 |
Organism: | Burkholderia pseudomallei |
Reign: | Bacteria |
TaxID: | 320372 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
C | 100 % |
B-Factor: | 35.545 |
---|---|
Number of residues: | 21 |
Including | |
Standard Amino Acids: | 21 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.594 | 762.750 |
% Hydrophobic | % Polar |
---|---|
67.70 | 32.30 |
According to VolSite |
HET Code: | 341 |
---|---|
Formula: | C7H6F2O |
Molecular weight: | 144.119 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 51.27 % |
Polar Surface area: | 20.23 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 1 |
H-Bond Donors: | 1 |
Rings: | 1 |
Aromatic rings: | 1 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 1 |
X | Y | Z |
---|---|---|
-15.2108 | 71.3631 | 3.6592 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O10 | NH2 | ARG- 97 | 3.03 | 156.63 | H-Bond (Protein Donor) |
O10 | OG | SER- 98 | 3.27 | 158.82 | H-Bond (Protein Donor) |
F7 | CD2 | LEU- 250 | 3.88 | 0 | Hydrophobic |
C3 | CD1 | ILE- 257 | 3.75 | 0 | Hydrophobic |
C1 | CD1 | ILE- 257 | 3.54 | 0 | Hydrophobic |
C1 | CD1 | ILE- 257 | 3.54 | 0 | Hydrophobic |
F8 | CG1 | VAL- 370 | 4.39 | 0 | Hydrophobic |
F7 | CE2 | TYR- 373 | 3.88 | 0 | Hydrophobic |
C1 | CB | TYR- 373 | 3.81 | 0 | Hydrophobic |
C2 | CG | GLU- 374 | 3.9 | 0 | Hydrophobic |