2.550 Å
X-ray
2008-09-28
| Name: | Glutaryl-CoA dehydrogenase |
|---|---|
| ID: | Q3JP94_BURP1 |
| AC: | Q3JP94 |
| Organism: | Burkholderia pseudomallei |
| Reign: | Bacteria |
| TaxID: | 320372 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| C | 100 % |
| B-Factor: | 35.545 |
|---|---|
| Number of residues: | 21 |
| Including | |
| Standard Amino Acids: | 21 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.594 | 762.750 |
| % Hydrophobic | % Polar |
|---|---|
| 67.70 | 32.30 |
| According to VolSite | |

| HET Code: | 341 |
|---|---|
| Formula: | C7H6F2O |
| Molecular weight: | 144.119 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 51.27 % |
| Polar Surface area: | 20.23 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 1 |
| H-Bond Donors: | 1 |
| Rings: | 1 |
| Aromatic rings: | 1 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 1 |
| X | Y | Z |
|---|---|---|
| -15.2108 | 71.3631 | 3.6592 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O10 | NH2 | ARG- 97 | 3.03 | 156.63 | H-Bond (Protein Donor) |
| O10 | OG | SER- 98 | 3.27 | 158.82 | H-Bond (Protein Donor) |
| F7 | CD2 | LEU- 250 | 3.88 | 0 | Hydrophobic |
| C3 | CD1 | ILE- 257 | 3.75 | 0 | Hydrophobic |
| C1 | CD1 | ILE- 257 | 3.54 | 0 | Hydrophobic |
| C1 | CD1 | ILE- 257 | 3.54 | 0 | Hydrophobic |
| F8 | CG1 | VAL- 370 | 4.39 | 0 | Hydrophobic |
| F7 | CE2 | TYR- 373 | 3.88 | 0 | Hydrophobic |
| C1 | CB | TYR- 373 | 3.81 | 0 | Hydrophobic |
| C2 | CG | GLU- 374 | 3.9 | 0 | Hydrophobic |