1.800 Å
X-ray
2008-06-17
Name: | Uncharacterized protein PA1000 |
---|---|
ID: | Y1000_PSEAE |
AC: | P20581 |
Organism: | Pseudomonas aeruginosa |
Reign: | Bacteria |
TaxID: | 208964 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 35.225 |
---|---|
Number of residues: | 31 |
Including | |
Standard Amino Acids: | 29 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | FE FE |
Ligandability | Volume (Å3) |
---|---|
1.060 | 513.000 |
% Hydrophobic | % Polar |
---|---|
65.79 | 34.21 |
According to VolSite |
HET Code: | B4N |
---|---|
Formula: | C12H8N2O8P |
Molecular weight: | 339.174 g/mol |
DrugBank ID: | DB07418 |
Buried Surface Area: | 73.14 % |
Polar Surface area: | 160.03 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 8 |
H-Bond Donors: | 0 |
Rings: | 2 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 2 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
-17.5115 | 2.33339 | -11.2094 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
CAM | CB | HIS- 71 | 3.97 | 0 | Hydrophobic |
CAL | CB | ALA- 182 | 4.5 | 0 | Hydrophobic |
CAK | CB | ALA- 182 | 3.57 | 0 | Hydrophobic |
OAA | CZ | ARG- 191 | 3.82 | 0 | Ionic (Protein Cationic) |
OAA | NH1 | ARG- 191 | 2.8 | 157.82 | H-Bond (Protein Donor) |
CAH | CD2 | LEU- 193 | 3.41 | 0 | Hydrophobic |
CAG | CD1 | LEU- 193 | 3.65 | 0 | Hydrophobic |
OAD | NE2 | GLN- 272 | 3.17 | 134.56 | H-Bond (Protein Donor) |
CAK | CB | SER- 273 | 4.31 | 0 | Hydrophobic |
CAL | CB | SER- 273 | 4.34 | 0 | Hydrophobic |
CAJ | CD2 | LEU- 277 | 4.41 | 0 | Hydrophobic |
CAQ | CD1 | LEU- 277 | 4.09 | 0 | Hydrophobic |
CAH | CD2 | LEU- 277 | 3.73 | 0 | Hydrophobic |
CAM | CD2 | LEU- 281 | 4.36 | 0 | Hydrophobic |
CAN | CD2 | LEU- 281 | 4.06 | 0 | Hydrophobic |
CAJ | CB | SER- 285 | 4.33 | 0 | Hydrophobic |
OAE | NH1 | ARG- 288 | 3.45 | 175.91 | H-Bond (Protein Donor) |
OAC | FE | FE- 998 | 2.47 | 0 | Metal Acceptor |
OAF | FE | FE- 999 | 2.03 | 0 | Metal Acceptor |