2.500 Å
X-ray
2010-09-14
Name: | Polyamine aminopropyltransferase |
---|---|
ID: | SPEE_THET8 |
AC: | Q5SK28 |
Organism: | Thermus thermophilus |
Reign: | Bacteria |
TaxID: | 300852 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 47.897 |
---|---|
Number of residues: | 31 |
Including | |
Standard Amino Acids: | 30 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.929 | 691.875 |
% Hydrophobic | % Polar |
---|---|
45.85 | 54.15 |
According to VolSite |
HET Code: | MTA |
---|---|
Formula: | C11H15N5O3S |
Molecular weight: | 297.333 g/mol |
DrugBank ID: | DB02282 |
Buried Surface Area: | 76.09 % |
Polar Surface area: | 144.61 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 8 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 3 |
X | Y | Z |
---|---|---|
36.7212 | 24.7449 | 127.96 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2' | OE1 | GLN- 33 | 3 | 147.65 | H-Bond (Ligand Donor) |
CS | CD2 | LEU- 49 | 3.76 | 0 | Hydrophobic |
C3' | CD2 | LEU- 49 | 4.42 | 0 | Hydrophobic |
CS | CB | GLN- 54 | 3.61 | 0 | Hydrophobic |
S5' | CG | GLN- 54 | 3.26 | 0 | Hydrophobic |
O4' | N | GLY- 86 | 3.41 | 157.54 | H-Bond (Protein Donor) |
O3' | N | GLY- 87 | 2.9 | 136.6 | H-Bond (Protein Donor) |
CS | CG | GLU- 88 | 4.16 | 0 | Hydrophobic |
O3' | OD2 | ASP- 108 | 2.51 | 167.72 | H-Bond (Ligand Donor) |
C3' | CD1 | LEU- 113 | 4.11 | 0 | Hydrophobic |