2.500 Å
X-ray
2010-09-14
| Name: | Polyamine aminopropyltransferase |
|---|---|
| ID: | SPEE_THET8 |
| AC: | Q5SK28 |
| Organism: | Thermus thermophilus |
| Reign: | Bacteria |
| TaxID: | 300852 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 100 % |
| B-Factor: | 47.897 |
|---|---|
| Number of residues: | 31 |
| Including | |
| Standard Amino Acids: | 30 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.929 | 691.875 |
| % Hydrophobic | % Polar |
|---|---|
| 45.85 | 54.15 |
| According to VolSite | |

| HET Code: | MTA |
|---|---|
| Formula: | C11H15N5O3S |
| Molecular weight: | 297.333 g/mol |
| DrugBank ID: | DB02282 |
| Buried Surface Area: | 76.09 % |
| Polar Surface area: | 144.61 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 8 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 3 |
| X | Y | Z |
|---|---|---|
| 36.7212 | 24.7449 | 127.96 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O2' | OE1 | GLN- 33 | 3 | 147.65 | H-Bond (Ligand Donor) |
| CS | CD2 | LEU- 49 | 3.76 | 0 | Hydrophobic |
| C3' | CD2 | LEU- 49 | 4.42 | 0 | Hydrophobic |
| CS | CB | GLN- 54 | 3.61 | 0 | Hydrophobic |
| S5' | CG | GLN- 54 | 3.26 | 0 | Hydrophobic |
| O4' | N | GLY- 86 | 3.41 | 157.54 | H-Bond (Protein Donor) |
| O3' | N | GLY- 87 | 2.9 | 136.6 | H-Bond (Protein Donor) |
| CS | CG | GLU- 88 | 4.16 | 0 | Hydrophobic |
| O3' | OD2 | ASP- 108 | 2.51 | 167.72 | H-Bond (Ligand Donor) |
| C3' | CD1 | LEU- 113 | 4.11 | 0 | Hydrophobic |