2.550 Å
X-ray
2009-12-08
Name: | WsaF |
---|---|
ID: | Q7BG50_GEOSE |
AC: | Q7BG50 |
Organism: | Geobacillus stearothermophilus |
Reign: | Bacteria |
TaxID: | 1422 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 37.337 |
---|---|
Number of residues: | 34 |
Including | |
Standard Amino Acids: | 33 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.962 | 1383.750 |
% Hydrophobic | % Polar |
---|---|
43.90 | 56.10 |
According to VolSite |
HET Code: | TRH |
---|---|
Formula: | C16H24N2O15P2 |
Molecular weight: | 546.314 g/mol |
DrugBank ID: | DB03723 |
Buried Surface Area: | 54.8 % |
Polar Surface area: | 276.36 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 15 |
H-Bond Donors: | 5 |
Rings: | 3 |
Aromatic rings: | 0 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
-10.171 | 6.88 | -12.9797 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O4 | O | LYS- 225 | 3.29 | 168.79 | H-Bond (Ligand Donor) |
C5A | CE1 | TYR- 247 | 3.89 | 0 | Hydrophobic |
C5A | CG2 | VAL- 282 | 3.72 | 0 | Hydrophobic |
N31 | O | LEU- 303 | 2.82 | 163.66 | H-Bond (Ligand Donor) |
O41 | N | LEU- 303 | 3.03 | 149.82 | H-Bond (Protein Donor) |
C1' | CD2 | LEU- 305 | 3.64 | 0 | Hydrophobic |
C5A | CE1 | TYR- 308 | 3.61 | 0 | Hydrophobic |
C2' | CE2 | TYR- 308 | 3.73 | 0 | Hydrophobic |
C1 | CE2 | TYR- 329 | 4.18 | 0 | Hydrophobic |
C2 | CD1 | TYR- 329 | 3.82 | 0 | Hydrophobic |
C3 | CE1 | TYR- 329 | 3.67 | 0 | Hydrophobic |