1.850 Å
X-ray
2009-06-29
| Name: | NmrA-like family domain-containing protein 1 |
|---|---|
| ID: | NMRL1_HUMAN |
| AC: | Q9HBL8 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 13.329 |
|---|---|
| Number of residues: | 22 |
| Including | |
| Standard Amino Acids: | 20 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 1 |
| Cofactors: | NAP |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.376 | 300.375 |
| % Hydrophobic | % Polar |
|---|---|
| 60.67 | 39.33 |
| According to VolSite | |

| HET Code: | NFL |
|---|---|
| Formula: | C13H8F3N2O2 |
| Molecular weight: | 281.210 g/mol |
| DrugBank ID: | DB04552 |
| Buried Surface Area: | 66.38 % |
| Polar Surface area: | 65.05 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 4 |
| H-Bond Donors: | 1 |
| Rings: | 2 |
| Aromatic rings: | 2 |
| Anionic atoms: | 1 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 4 |
| X | Y | Z |
|---|---|---|
| 71.6818 | 16.7576 | 86.5134 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C15 | CH2 | TRP- 82 | 3.88 | 0 | Hydrophobic |
| F1 | CE2 | TRP- 82 | 3.23 | 0 | Hydrophobic |
| F2 | CZ3 | TRP- 82 | 3.27 | 0 | Hydrophobic |
| C10 | CZ2 | TRP- 82 | 3.21 | 0 | Hydrophobic |
| O7 | NE1 | TRP- 82 | 2.55 | 164.43 | H-Bond (Protein Donor) |
| C13 | CB | HIS- 162 | 3.87 | 0 | Hydrophobic |
| F2 | CD1 | LEU- 257 | 4.12 | 0 | Hydrophobic |
| C14 | CD1 | LEU- 257 | 4.03 | 0 | Hydrophobic |
| C12 | CD2 | LEU- 257 | 3.9 | 0 | Hydrophobic |
| C12 | CE | MET- 260 | 4.47 | 0 | Hydrophobic |
| C4 | SD | MET- 260 | 3.45 | 0 | Hydrophobic |