2.700 Å
X-ray
1993-04-05
Name: | Thymidylate synthase |
---|---|
ID: | TYSY_LACCA |
AC: | P00469 |
Organism: | Lactobacillus casei |
Reign: | Bacteria |
TaxID: | 1582 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 24.551 |
---|---|
Number of residues: | 27 |
Including | |
Standard Amino Acids: | 26 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.720 | 1765.125 |
% Hydrophobic | % Polar |
---|---|
40.73 | 59.27 |
According to VolSite |
HET Code: | THF |
---|---|
Formula: | C20H21N7O7 |
Molecular weight: | 471.423 g/mol |
DrugBank ID: | DB02800 |
Buried Surface Area: | 38.94 % |
Polar Surface area: | 224.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 13 |
H-Bond Donors: | 5 |
Rings: | 3 |
Aromatic rings: | 1 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 10 |
X | Y | Z |
---|---|---|
19.6129 | 49.7678 | -48.0388 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C9 | CG2 | ILE- 81 | 4.08 | 0 | Hydrophobic |
C15 | CG2 | ILE- 81 | 3.91 | 0 | Hydrophobic |
NA2 | OE2 | GLU- 84 | 3.49 | 140.89 | H-Bond (Ligand Donor) |
NA2 | OE1 | GLU- 84 | 2.54 | 125.29 | H-Bond (Ligand Donor) |
N8 | NE1 | TRP- 85 | 2.66 | 152.95 | H-Bond (Protein Donor) |
CP1 | CD1 | LEU- 195 | 4.34 | 0 | Hydrophobic |
C12 | CD1 | LEU- 224 | 4.08 | 0 | Hydrophobic |
N3 | OXT | ALA- 315 | 3.38 | 147.89 | H-Bond (Ligand Donor) |