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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Protein Data Bank Entry:

2j50

3.000 Å

X-ray

2006-09-08

Activity from ChEMBL: What is pChEMBL ?
MinMeanMedianStandard DeviationMaxCount
pChEMBL:7.8908.2408.2400.3608.6002

List of CHEMBLId :

CHEMBL402548


Interactomes:
Molecular Function:
Binding Site :

Uniprot Annotation

Name:Aurora kinase A
ID:AURKA_HUMAN
AC:O14965
Organism:Homo sapiens
Reign:Eukaryota
TaxID:9606
EC Number:2.7.11.1


Chains:

Chain Name:Percentage of Residues
within binding site
B100 %


Ligand binding site composition:

B-Factor:58.062
Number of residues:31
Including
Standard Amino Acids: 31
Non Standard Amino Acids: 0
Water Molecules: 0
Cofactors:
Metals:

Cavity properties

LigandabilityVolume (Å3)
0.716425.250

% Hydrophobic% Polar
47.6252.38
According to VolSite

Ligand :
2j50_2 Structure
HET Code: 627
Formula: C26H31N6O3
Molecular weight: 475.563 g/mol
DrugBank ID: DB11778
Buried Surface Area:48.3 %
Polar Surface area: 95 Å2
Number of
H-Bond Acceptors: 5
H-Bond Donors: 3
Rings: 5
Aromatic rings: 3
Anionic atoms: 0
Cationic atoms: 1
Rule of Five Violation: 0
Rotatable Bonds: 6

Mass center Coordinates

XYZ
71.526147.107118.2195


Binding mode :
What is Poseview ?
  • 2D View
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Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
C7CD2LEU- 1393.980Hydrophobic
C20CG1VAL- 1474.120Hydrophobic
O34NZLYS- 1622.55159.36H-Bond
(Protein Donor)
N2OGLU- 2112.79171.66H-Bond
(Ligand Donor)
N4NALA- 2132.76164.95H-Bond
(Protein Donor)
N5OALA- 2132.99145.79H-Bond
(Ligand Donor)
C31CG2THR- 2173.780Hydrophobic
C33CD1LEU- 2634.080Hydrophobic
C35CD2LEU- 2634.010Hydrophobic
C33CBALA- 2733.730Hydrophobic