2.200 Å
X-ray
2006-09-01
Name: | Uridylate kinase |
---|---|
ID: | PYRH_SULSO |
AC: | Q97ZE2 |
Organism: | Sulfolobus solfataricus |
Reign: | Archaea |
TaxID: | 273057 |
EC Number: | 2.7.4.22 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 6 % |
E | 94 % |
B-Factor: | 23.434 |
---|---|
Number of residues: | 34 |
Including | |
Standard Amino Acids: | 34 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.177 | 516.375 |
% Hydrophobic | % Polar |
---|---|
39.22 | 60.78 |
According to VolSite |
HET Code: | U5P |
---|---|
Formula: | C9H11N2O9P |
Molecular weight: | 322.165 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 66.32 % |
Polar Surface area: | 181.33 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 9 |
H-Bond Donors: | 3 |
Rings: | 2 |
Aromatic rings: | 0 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 4 |
X | Y | Z |
---|---|---|
31.1794 | -5.85229 | -12.0822 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2P | N | GLY- 43 | 2.75 | 170.19 | H-Bond (Protein Donor) |
C5' | CB | ALA- 47 | 4.33 | 0 | Hydrophobic |
O2' | OD1 | ASP- 65 | 2.71 | 173.69 | H-Bond (Ligand Donor) |
C1' | CG1 | ILE- 69 | 4.24 | 0 | Hydrophobic |
O4 | N | PHE- 113 | 2.9 | 166.65 | H-Bond (Protein Donor) |
N3 | O | GLN- 114 | 2.52 | 166.15 | H-Bond (Ligand Donor) |
O4 | N | GLN- 114 | 3.21 | 153.6 | H-Bond (Protein Donor) |
O4 | NE2 | GLN- 117 | 2.65 | 160.77 | H-Bond (Protein Donor) |
O1P | OG1 | THR- 119 | 2.6 | 173.3 | H-Bond (Protein Donor) |
O1P | N | THR- 119 | 2.75 | 166.26 | H-Bond (Protein Donor) |