2.830 Å
X-ray
2006-06-29
Name: | Azurin |
---|---|
ID: | AZUR_PSEAE |
AC: | P00282 |
Organism: | Pseudomonas aeruginosa |
Reign: | Bacteria |
TaxID: | 208964 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 50 % |
J | 50 % |
B-Factor: | 30.651 |
---|---|
Number of residues: | 34 |
Including | |
Standard Amino Acids: | 32 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | ZN ZN |
Ligandability | Volume (Å3) |
---|---|
1.355 | 705.375 |
% Hydrophobic | % Polar |
---|---|
53.11 | 46.89 |
According to VolSite |
HET Code: | 2IH |
---|---|
Formula: | C12H18N4 |
Molecular weight: | 218.298 g/mol |
DrugBank ID: | DB06968 |
Buried Surface Area: | 82.25 % |
Polar Surface area: | 35.64 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 2 |
H-Bond Donors: | 0 |
Rings: | 2 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 7 |
X | Y | Z |
---|---|---|
-12.8289 | -10.4584 | -0.311938 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C10 | SD | MET- 13 | 3.82 | 0 | Hydrophobic |
C11 | CG | MET- 13 | 4.32 | 0 | Hydrophobic |
C6 | SD | MET- 13 | 3.91 | 0 | Hydrophobic |
C11 | SD | MET- 44 | 3.49 | 0 | Hydrophobic |
C7 | CE | MET- 44 | 3.67 | 0 | Hydrophobic |
C9 | CE | MET- 44 | 3.91 | 0 | Hydrophobic |
C6 | CD1 | PHE- 114 | 3.8 | 0 | Hydrophobic |
C11 | CD1 | PHE- 114 | 3.56 | 0 | Hydrophobic |
C7 | CE1 | PHE- 114 | 4.18 | 0 | Hydrophobic |
N4 | ZN | ZN- 1129 | 2.08 | 0 | Metal Acceptor |
N15 | ZN | ZN- 1129 | 2.06 | 0 | Metal Acceptor |
DuAr | ZN | ZN- 1129 | 2.96 | 108.55 | Pi/Cation |
DuAr | ZN | ZN- 1129 | 3.07 | 92.88 | Pi/Cation |