2.900 Å
X-ray
2006-08-12
| Name: | Nicotinate-nucleotide pyrophosphorylase |
|---|---|
| ID: | Q8TZS9_PYRFU |
| AC: | Q8TZS9 |
| Organism: | Pyrococcus furiosus |
| Reign: | Archaea |
| TaxID: | 186497 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| C | 73 % |
| D | 27 % |
| B-Factor: | 57.615 |
|---|---|
| Number of residues: | 33 |
| Including | |
| Standard Amino Acids: | 32 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | ZN |
| Ligandability | Volume (Å3) |
|---|---|
| 0.004 | 644.625 |
| % Hydrophobic | % Polar |
|---|---|
| 40.31 | 59.69 |
| According to VolSite | |

| HET Code: | PCP |
|---|---|
| Formula: | C6H10O13P3 |
| Molecular weight: | 383.057 g/mol |
| DrugBank ID: | DB03942 |
| Buried Surface Area: | 56.38 % |
| Polar Surface area: | 264.08 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 13 |
| H-Bond Donors: | 2 |
| Rings: | 1 |
| Aromatic rings: | 0 |
| Anionic atoms: | 5 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 7 |
| X | Y | Z |
|---|---|---|
| 120.037 | 145.657 | -117.072 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C3 | CB | PHE- 1134 | 3.5 | 0 | Hydrophobic |
| C4 | CD2 | PHE- 1134 | 3.82 | 0 | Hydrophobic |
| CP | CB | PHE- 1134 | 4.09 | 0 | Hydrophobic |
| C2 | CD | ARG- 1137 | 3.99 | 0 | Hydrophobic |
| O1B | N | HIS- 1178 | 2.78 | 128.55 | H-Bond (Protein Donor) |
| C4 | CB | SER- 1268 | 4.21 | 0 | Hydrophobic |
| O3P | N | GLY- 1270 | 3.06 | 151.14 | H-Bond (Protein Donor) |
| O2P | N | GLY- 1289 | 3.17 | 133.05 | H-Bond (Protein Donor) |
| O1P | N | GLY- 1290 | 2.68 | 175.5 | H-Bond (Protein Donor) |
| O2B | OH | TYR- 1421 | 2.67 | 168.82 | H-Bond (Protein Donor) |