2.900 Å
X-ray
2006-08-12
Name: | Nicotinate-nucleotide pyrophosphorylase |
---|---|
ID: | Q8TZS9_PYRFU |
AC: | Q8TZS9 |
Organism: | Pyrococcus furiosus |
Reign: | Archaea |
TaxID: | 186497 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
C | 73 % |
D | 27 % |
B-Factor: | 57.615 |
---|---|
Number of residues: | 33 |
Including | |
Standard Amino Acids: | 32 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | ZN |
Ligandability | Volume (Å3) |
---|---|
0.004 | 644.625 |
% Hydrophobic | % Polar |
---|---|
40.31 | 59.69 |
According to VolSite |
HET Code: | PCP |
---|---|
Formula: | C6H10O13P3 |
Molecular weight: | 383.057 g/mol |
DrugBank ID: | DB03942 |
Buried Surface Area: | 56.38 % |
Polar Surface area: | 264.08 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 13 |
H-Bond Donors: | 2 |
Rings: | 1 |
Aromatic rings: | 0 |
Anionic atoms: | 5 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 7 |
X | Y | Z |
---|---|---|
120.037 | 145.657 | -117.072 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C3 | CB | PHE- 1134 | 3.5 | 0 | Hydrophobic |
C4 | CD2 | PHE- 1134 | 3.82 | 0 | Hydrophobic |
CP | CB | PHE- 1134 | 4.09 | 0 | Hydrophobic |
C2 | CD | ARG- 1137 | 3.99 | 0 | Hydrophobic |
O1B | N | HIS- 1178 | 2.78 | 128.55 | H-Bond (Protein Donor) |
C4 | CB | SER- 1268 | 4.21 | 0 | Hydrophobic |
O3P | N | GLY- 1270 | 3.06 | 151.14 | H-Bond (Protein Donor) |
O2P | N | GLY- 1289 | 3.17 | 133.05 | H-Bond (Protein Donor) |
O1P | N | GLY- 1290 | 2.68 | 175.5 | H-Bond (Protein Donor) |
O2B | OH | TYR- 1421 | 2.67 | 168.82 | H-Bond (Protein Donor) |