2.520 Å
X-ray
2006-07-20
| Name: | Phosphoribosylformylglycinamidine synthase subunit PurL |
|---|---|
| ID: | PURL_THEMA |
| AC: | Q9X0X3 |
| Organism: | Thermotoga maritima |
| Reign: | Bacteria |
| TaxID: | 243274 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 34.069 |
|---|---|
| Number of residues: | 36 |
| Including | |
| Standard Amino Acids: | 35 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | MG |
| Ligandability | Volume (Å3) |
|---|---|
| 1.020 | 1380.375 |
| % Hydrophobic | % Polar |
|---|---|
| 38.88 | 61.12 |
| According to VolSite | |

| HET Code: | ATP |
|---|---|
| Formula: | C10H12N5O13P3 |
| Molecular weight: | 503.149 g/mol |
| DrugBank ID: | DB00171 |
| Buried Surface Area: | 51.07 % |
| Polar Surface area: | 319.88 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 17 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 4 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 2 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| 27.2163 | -29.4832 | 132.275 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C5' | CE1 | TYR- 35 | 4.17 | 0 | Hydrophobic |
| O1G | NZ | LYS- 68 | 3.4 | 0 | Ionic (Protein Cationic) |
| O1B | NZ | LYS- 68 | 2.63 | 0 | Ionic (Protein Cationic) |
| O1A | NZ | LYS- 68 | 3.47 | 0 | Ionic (Protein Cationic) |
| O1B | NZ | LYS- 68 | 2.63 | 128.07 | H-Bond (Protein Donor) |
| O1A | NZ | LYS- 68 | 3.47 | 122.6 | H-Bond (Protein Donor) |
| N6 | OD1 | ASN- 442 | 2.79 | 128.47 | H-Bond (Ligand Donor) |
| N1 | ND2 | ASN- 442 | 2.84 | 152.25 | H-Bond (Protein Donor) |
| O2' | N | GLY- 477 | 3.18 | 154.6 | H-Bond (Protein Donor) |
| N6 | O | ASN- 478 | 3.07 | 134.69 | H-Bond (Ligand Donor) |