2.400 Å
X-ray
2006-05-16
Name: | Lipopolysaccharide heptosyltransferase 1 |
---|---|
ID: | RFAC_ECOLI |
AC: | P24173 |
Organism: | Escherichia coli |
Reign: | Bacteria |
TaxID: | 83333 |
EC Number: | 2 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 28.704 |
---|---|
Number of residues: | 35 |
Including | |
Standard Amino Acids: | 35 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.394 | 313.875 |
% Hydrophobic | % Polar |
---|---|
45.16 | 54.84 |
According to VolSite |
HET Code: | AFH |
---|---|
Formula: | C17H24FN5O15P2 |
Molecular weight: | 619.343 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 51.07 % |
Polar Surface area: | 337.03 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 19 |
H-Bond Donors: | 7 |
Rings: | 4 |
Aromatic rings: | 2 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 3 |
Rotatable Bonds: | 10 |
X | Y | Z |
---|---|---|
43.8805 | 8.84842 | 2.8083 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2A | OG1 | THR- 187 | 2.87 | 173.67 | H-Bond (Protein Donor) |
O1A | N | THR- 188 | 3.1 | 124.98 | H-Bond (Protein Donor) |
O6' | NZ | LYS- 192 | 2.94 | 144.7 | H-Bond (Protein Donor) |
O2' | OE2 | GLU- 222 | 3.29 | 137.65 | H-Bond (Ligand Donor) |
O2' | OE1 | GLU- 222 | 2.66 | 147.25 | H-Bond (Ligand Donor) |
N6 | O | MET- 242 | 3.32 | 132.69 | H-Bond (Ligand Donor) |
O3' | OD2 | ASP- 261 | 3.28 | 120.27 | H-Bond (Ligand Donor) |
O3' | OD1 | ASP- 261 | 2.54 | 163.04 | H-Bond (Ligand Donor) |
O3' | NE2 | HIS- 266 | 3.27 | 178.2 | H-Bond (Protein Donor) |
C4' | CD1 | ILE- 287 | 3.73 | 0 | Hydrophobic |