1.450 Å
X-ray
2006-03-23
| Name: | Methionine aminopeptidase |
|---|---|
| ID: | MAP1_ECOLI |
| AC: | P0AE18 |
| Organism: | Escherichia coli |
| Reign: | Bacteria |
| TaxID: | 83333 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 15.726 |
|---|---|
| Number of residues: | 24 |
| Including | |
| Standard Amino Acids: | 24 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.450 | 391.500 |
| % Hydrophobic | % Polar |
|---|---|
| 48.28 | 51.72 |
| According to VolSite | |

| HET Code: | U13 |
|---|---|
| Formula: | C9H9FN6 |
| Molecular weight: | 220.206 g/mol |
| DrugBank ID: | DB08667 |
| Buried Surface Area: | 64.69 % |
| Polar Surface area: | 102.67 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 4 |
| H-Bond Donors: | 2 |
| Rings: | 2 |
| Aromatic rings: | 1 |
| Anionic atoms: | 0 |
| Cationic atoms: | 2 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 2 |
| X | Y | Z |
|---|---|---|
| -3.21406 | -0.418563 | 8.81312 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| F7 | CE2 | TYR- 62 | 4.11 | 0 | Hydrophobic |
| C1 | CD2 | TYR- 62 | 3.38 | 0 | Hydrophobic |
| F7 | CB | HIS- 63 | 3.37 | 0 | Hydrophobic |
| C1 | CB | TYR- 65 | 4.37 | 0 | Hydrophobic |
| N16 | OD1 | ASP- 97 | 3.35 | 143.11 | H-Bond (Ligand Donor) |
| N18 | NE2 | HIS- 171 | 3.42 | 124.08 | H-Bond (Ligand Donor) |
| N17 | OE2 | GLU- 204 | 3.4 | 152.31 | H-Bond (Ligand Donor) |
| F7 | CH2 | TRP- 221 | 3.43 | 0 | Hydrophobic |