1.450 Å
X-ray
2006-03-23
Name: | Methionine aminopeptidase |
---|---|
ID: | MAP1_ECOLI |
AC: | P0AE18 |
Organism: | Escherichia coli |
Reign: | Bacteria |
TaxID: | 83333 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 15.726 |
---|---|
Number of residues: | 24 |
Including | |
Standard Amino Acids: | 24 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.450 | 391.500 |
% Hydrophobic | % Polar |
---|---|
48.28 | 51.72 |
According to VolSite |
HET Code: | U13 |
---|---|
Formula: | C9H9FN6 |
Molecular weight: | 220.206 g/mol |
DrugBank ID: | DB08667 |
Buried Surface Area: | 64.69 % |
Polar Surface area: | 102.67 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 4 |
H-Bond Donors: | 2 |
Rings: | 2 |
Aromatic rings: | 1 |
Anionic atoms: | 0 |
Cationic atoms: | 2 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
-3.21406 | -0.418563 | 8.81312 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
F7 | CE2 | TYR- 62 | 4.11 | 0 | Hydrophobic |
C1 | CD2 | TYR- 62 | 3.38 | 0 | Hydrophobic |
F7 | CB | HIS- 63 | 3.37 | 0 | Hydrophobic |
C1 | CB | TYR- 65 | 4.37 | 0 | Hydrophobic |
N16 | OD1 | ASP- 97 | 3.35 | 143.11 | H-Bond (Ligand Donor) |
N18 | NE2 | HIS- 171 | 3.42 | 124.08 | H-Bond (Ligand Donor) |
N17 | OE2 | GLU- 204 | 3.4 | 152.31 | H-Bond (Ligand Donor) |
F7 | CH2 | TRP- 221 | 3.43 | 0 | Hydrophobic |