2.000 Å
X-ray
2006-02-14
Name: | Class B acid phosphatase |
---|---|
ID: | APHA_ECOLI |
AC: | P0AE22 |
Organism: | Escherichia coli |
Reign: | Bacteria |
TaxID: | 83333 |
EC Number: | 3.1.3.2 |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 6.797 |
---|---|
Number of residues: | 35 |
Including | |
Standard Amino Acids: | 32 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 2 |
Cofactors: | |
Metals: | MG |
Ligandability | Volume (Å3) |
---|---|
0.471 | 590.625 |
% Hydrophobic | % Polar |
---|---|
41.71 | 58.29 |
According to VolSite |
HET Code: | 5HG |
---|---|
Formula: | C8H10N5O4P |
Molecular weight: | 271.170 g/mol |
DrugBank ID: | DB13868 |
Buried Surface Area: | 66.27 % |
Polar Surface area: | 151.85 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 8 |
H-Bond Donors: | 1 |
Rings: | 2 |
Aromatic rings: | 2 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 5 |
X | Y | Z |
---|---|---|
40.9672 | -9.50272 | 20.7042 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C22 | CB | ASP- 46 | 4.04 | 0 | Hydrophobic |
N6 | OG | SER- 53 | 2.76 | 160.72 | H-Bond (Protein Donor) |
C22 | CZ | PHE- 56 | 3.59 | 0 | Hydrophobic |
DuAr | DuAr | PHE- 56 | 3.71 | 0 | Aromatic Face/Face |
O32 | N | GLY- 113 | 2.74 | 155.22 | H-Bond (Protein Donor) |
O36 | NZ | LYS- 152 | 3.95 | 0 | Ionic (Protein Cationic) |
O32 | NZ | LYS- 152 | 2.8 | 0 | Ionic (Protein Cationic) |
O34 | NZ | LYS- 152 | 3.71 | 0 | Ionic (Protein Cationic) |
O32 | NZ | LYS- 152 | 2.8 | 157.56 | H-Bond (Protein Donor) |
O34 | ND2 | ASN- 170 | 3.49 | 158.07 | H-Bond (Protein Donor) |
C24 | CE2 | TYR- 193 | 3.44 | 0 | Hydrophobic |
O32 | O | HOH- 711 | 2.88 | 173.78 | H-Bond (Protein Donor) |