2.100 Å
X-ray
2005-12-10
Name: | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial | Succinate dehydrogenase cytochrome b, large subunit |
---|---|---|
ID: | SDHB_CHICK | D0VWW3_CHICK |
AC: | Q9YHT2 | D0VWW3 |
Organism: | Gallus gallus | |
Reign: | Eukaryota | |
TaxID: | 9031 | |
EC Number: | 1.3.5.1 | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
O | 40 % |
P | 50 % |
Q | 10 % |
B-Factor: | 29.271 |
---|---|
Number of residues: | 21 |
Including | |
Standard Amino Acids: | 19 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.213 | 263.250 |
% Hydrophobic | % Polar |
---|---|
50.00 | 50.00 |
According to VolSite |
HET Code: | CBE |
---|---|
Formula: | C12H13NO2S |
Molecular weight: | 235.302 g/mol |
DrugBank ID: | DB04657 |
Buried Surface Area: | 63.48 % |
Polar Surface area: | 63.63 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 3 |
H-Bond Donors: | 1 |
Rings: | 2 |
Aromatic rings: | 1 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
44.9265 | -16.0181 | 5.44988 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C14 | CG1 | ILE- 27 | 3.61 | 0 | Hydrophobic |
C15 | CD1 | ILE- 27 | 3.77 | 0 | Hydrophobic |
C13 | CE | MET- 36 | 3.56 | 0 | Hydrophobic |
C16 | CG2 | ILE- 40 | 4.42 | 0 | Hydrophobic |
C12 | CG2 | ILE- 40 | 3.89 | 0 | Hydrophobic |
C6 | CD | ARG- 43 | 4.47 | 0 | Hydrophobic |
S4 | CZ | TYR- 58 | 4.47 | 0 | Hydrophobic |
O9 | OH | TYR- 58 | 2.68 | 176.82 | H-Bond (Protein Donor) |
C12 | CG | PRO- 169 | 3.79 | 0 | Hydrophobic |
O9 | NE1 | TRP- 173 | 2.87 | 151.8 | H-Bond (Protein Donor) |
C6 | CB | HIS- 216 | 3.5 | 0 | Hydrophobic |
C5 | CD1 | ILE- 218 | 3.7 | 0 | Hydrophobic |
N10 | O | HOH- 1687 | 3.09 | 153 | H-Bond (Ligand Donor) |