2.100 Å
X-ray
2005-12-10
| Name: | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial | Succinate dehydrogenase cytochrome b, large subunit |
|---|---|---|
| ID: | SDHB_CHICK | D0VWW3_CHICK |
| AC: | Q9YHT2 | D0VWW3 |
| Organism: | Gallus gallus | |
| Reign: | Eukaryota | |
| TaxID: | 9031 | |
| EC Number: | 1.3.5.1 | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| O | 40 % |
| P | 50 % |
| Q | 10 % |
| B-Factor: | 29.271 |
|---|---|
| Number of residues: | 21 |
| Including | |
| Standard Amino Acids: | 19 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.213 | 263.250 |
| % Hydrophobic | % Polar |
|---|---|
| 50.00 | 50.00 |
| According to VolSite | |

| HET Code: | CBE |
|---|---|
| Formula: | C12H13NO2S |
| Molecular weight: | 235.302 g/mol |
| DrugBank ID: | DB04657 |
| Buried Surface Area: | 63.48 % |
| Polar Surface area: | 63.63 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 3 |
| H-Bond Donors: | 1 |
| Rings: | 2 |
| Aromatic rings: | 1 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 2 |
| X | Y | Z |
|---|---|---|
| 44.9265 | -16.0181 | 5.44988 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C14 | CG1 | ILE- 27 | 3.61 | 0 | Hydrophobic |
| C15 | CD1 | ILE- 27 | 3.77 | 0 | Hydrophobic |
| C13 | CE | MET- 36 | 3.56 | 0 | Hydrophobic |
| C16 | CG2 | ILE- 40 | 4.42 | 0 | Hydrophobic |
| C12 | CG2 | ILE- 40 | 3.89 | 0 | Hydrophobic |
| C6 | CD | ARG- 43 | 4.47 | 0 | Hydrophobic |
| S4 | CZ | TYR- 58 | 4.47 | 0 | Hydrophobic |
| O9 | OH | TYR- 58 | 2.68 | 176.82 | H-Bond (Protein Donor) |
| C12 | CG | PRO- 169 | 3.79 | 0 | Hydrophobic |
| O9 | NE1 | TRP- 173 | 2.87 | 151.8 | H-Bond (Protein Donor) |
| C6 | CB | HIS- 216 | 3.5 | 0 | Hydrophobic |
| C5 | CD1 | ILE- 218 | 3.7 | 0 | Hydrophobic |
| N10 | O | HOH- 1687 | 3.09 | 153 | H-Bond (Ligand Donor) |