2.200 Å
X-ray
2005-08-03
| Name: | Glutamate 5-kinase |
|---|---|
| ID: | PROB_CAMJE |
| AC: | Q9PJ29 |
| Organism: | Campylobacter jejuni subsp. jejuni serotype O:2 |
| Reign: | Bacteria |
| TaxID: | 192222 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 100 % |
| B-Factor: | 28.184 |
|---|---|
| Number of residues: | 36 |
| Including | |
| Standard Amino Acids: | 33 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 3 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.014 | 391.500 |
| % Hydrophobic | % Polar |
|---|---|
| 52.59 | 47.41 |
| According to VolSite | |

| HET Code: | ADP |
|---|---|
| Formula: | C10H12N5O10P2 |
| Molecular weight: | 424.177 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 65.34 % |
| Polar Surface area: | 260.7 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 14 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 3 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| 37.0899 | -36.3651 | 13.9774 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O2B | OG | SER- 162 | 2.72 | 141.62 | H-Bond (Protein Donor) |
| O3A | OG | SER- 162 | 3.33 | 144.99 | H-Bond (Protein Donor) |
| O1B | N | ASP- 163 | 2.99 | 158.13 | H-Bond (Protein Donor) |
| C5' | CG2 | ILE- 164 | 3.88 | 0 | Hydrophobic |
| C3' | CB | ILE- 164 | 3.7 | 0 | Hydrophobic |
| N6 | O | TYR- 168 | 2.97 | 155.05 | H-Bond (Ligand Donor) |
| N1 | N | TYR- 168 | 3.16 | 146.77 | H-Bond (Protein Donor) |
| O2' | OG | SER- 173 | 2.6 | 147.11 | H-Bond (Ligand Donor) |
| O2A | OG1 | THR- 204 | 2.63 | 161.45 | H-Bond (Protein Donor) |
| O2A | N | GLY- 206 | 3.1 | 135.58 | H-Bond (Protein Donor) |
| O2B | NZ | LYS- 210 | 3.06 | 139.97 | H-Bond (Protein Donor) |
| O2B | NZ | LYS- 210 | 3.06 | 0 | Ionic (Protein Cationic) |
| O2B | O | HOH- 864 | 2.82 | 159.81 | H-Bond (Protein Donor) |
| O3B | O | HOH- 868 | 2.75 | 144.73 | H-Bond (Protein Donor) |
| O2A | O | HOH- 965 | 2.61 | 154.76 | H-Bond (Protein Donor) |