2.020 Å
X-ray
2005-05-16
| Name: | Gag-Pol polyprotein |
|---|---|
| ID: | POL_HV1B1 |
| AC: | P03366 |
| Organism: | Human immunodeficiency virus type 1 group M subtype B |
| Reign: | Viruses |
| TaxID: | 11678 |
| EC Number: | 3.4.23.16 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 33.240 |
|---|---|
| Number of residues: | 20 |
| Including | |
| Standard Amino Acids: | 20 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.373 | 340.875 |
| % Hydrophobic | % Polar |
|---|---|
| 50.50 | 49.50 |
| According to VolSite | |

| HET Code: | A83 |
|---|---|
| Formula: | C37H48N6O7S |
| Molecular weight: | 720.878 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 24.35 % |
| Polar Surface area: | 173.35 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 9 |
| H-Bond Donors: | 3 |
| Rings: | 4 |
| Aromatic rings: | 4 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 3 |
| Rotatable Bonds: | 18 |
| X | Y | Z |
|---|---|---|
| -11.0078 | 14.4287 | 28.5708 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O4 | OD1 | ASP- 25 | 2.81 | 155.6 | H-Bond (Ligand Donor) |
| O4 | OD2 | ASP- 25 | 3.26 | 139.46 | H-Bond (Ligand Donor) |
| O | N | ASP- 29 | 2.87 | 138.68 | H-Bond (Protein Donor) |
| C26 | CB | ASP- 29 | 4.11 | 0 | Hydrophobic |
| C11 | CD1 | ILE- 50 | 4.44 | 0 | Hydrophobic |
| C21 | CG1 | ILE- 50 | 3.86 | 0 | Hydrophobic |
| C9 | CG | PRO- 81 | 4.35 | 0 | Hydrophobic |
| C10 | CG1 | VAL- 82 | 3.86 | 0 | Hydrophobic |
| C10 | CD1 | ILE- 84 | 3.3 | 0 | Hydrophobic |