2.020 Å
X-ray
2005-05-16
Name: | Protease |
---|---|
ID: | O92139_9HIV1 |
AC: | O92139 |
Organism: | Human immunodeficiency virus 1 |
Reign: | Viruses |
TaxID: | 11676 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 24.333 |
---|---|
Number of residues: | 23 |
Including | |
Standard Amino Acids: | 23 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.427 | 334.125 |
% Hydrophobic | % Polar |
---|---|
52.53 | 47.47 |
According to VolSite |
HET Code: | AB2 |
---|---|
Formula: | C34H41N5O7S |
Molecular weight: | 663.784 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 32.73 % |
Polar Surface area: | 164.48 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 9 |
H-Bond Donors: | 3 |
Rings: | 5 |
Aromatic rings: | 4 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 15 |
X | Y | Z |
---|---|---|
-10.3066 | 15.0296 | 28.3587 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O4 | OD1 | ASP- 25 | 2.64 | 132.23 | H-Bond (Ligand Donor) |
O4 | OD2 | ASP- 25 | 2.74 | 145.35 | H-Bond (Ligand Donor) |
C24 | CB | ALA- 28 | 4 | 0 | Hydrophobic |
O6 | N | ASP- 30 | 2.77 | 157.56 | H-Bond (Protein Donor) |
C24 | CG2 | VAL- 32 | 4.44 | 0 | Hydrophobic |
C33 | CB | ILE- 47 | 4.21 | 0 | Hydrophobic |
C17 | CD1 | ILE- 50 | 3.98 | 0 | Hydrophobic |
C18 | CG1 | ILE- 50 | 3.58 | 0 | Hydrophobic |
C11 | CG1 | VAL- 82 | 3.29 | 0 | Hydrophobic |
C11 | CD1 | ILE- 84 | 3.3 | 0 | Hydrophobic |