2.200 Å
X-ray
1996-08-01
| Name: | Gag-Pol polyprotein |
|---|---|
| ID: | POL_SIVM1 |
| AC: | P05896 |
| Organism: | Simian immunodeficiency virus |
| Reign: | Viruses |
| TaxID: | 11733 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 30.172 |
|---|---|
| Number of residues: | 19 |
| Including | |
| Standard Amino Acids: | 19 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.807 | 371.250 |
| % Hydrophobic | % Polar |
|---|---|
| 56.36 | 43.64 |
| According to VolSite | |

| HET Code: | PHE_LEU_GLU_LYS |
|---|---|
| Formula: | C26H41N5O7 |
| Molecular weight: | 535.633 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 32.16 % |
| Polar Surface area: | 222.83 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 7 |
| H-Bond Donors: | 5 |
| Rings: | 1 |
| Aromatic rings: | 1 |
| Anionic atoms: | 2 |
| Cationic atoms: | 2 |
| Rule of Five Violation: | 2 |
| Rotatable Bonds: | 18 |
| X | Y | Z |
|---|---|---|
| -22.0524 | -5.77863 | -4.75747 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| N | O | GLY- 27 | 3.48 | 141.33 | H-Bond (Ligand Donor) |
| CB | CB | ALA- 28 | 3.91 | 0 | Hydrophobic |
| CD2 | CB | ALA- 28 | 4.24 | 0 | Hydrophobic |
| O | N | ASP- 29 | 3.27 | 169.94 | H-Bond (Protein Donor) |
| CD2 | CG2 | ILE- 32 | 3.6 | 0 | Hydrophobic |
| CG | CG1 | VAL- 47 | 3.73 | 0 | Hydrophobic |
| N | O | GLY- 48 | 2.95 | 158.29 | H-Bond (Ligand Donor) |
| O | N | GLY- 48 | 2.71 | 142.93 | H-Bond (Protein Donor) |
| NZ | OE2 | GLU- 58 | 2.83 | 121.55 | H-Bond (Ligand Donor) |
| NZ | OE2 | GLU- 58 | 2.83 | 0 | Ionic (Ligand Cationic) |
| CG | CE | MET- 76 | 4.14 | 0 | Hydrophobic |
| CD2 | CG1 | ILE- 84 | 3.91 | 0 | Hydrophobic |