2.600 Å
X-ray
2005-01-29
| Name: | Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic |
|---|---|
| ID: | GLGS_SOLTU |
| AC: | P23509 |
| Organism: | Solanum tuberosum |
| Reign: | Eukaryota |
| TaxID: | 4113 |
| EC Number: | 2.7.7.27 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 43.843 |
|---|---|
| Number of residues: | 36 |
| Including | |
| Standard Amino Acids: | 36 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.789 | 658.125 |
| % Hydrophobic | % Polar |
|---|---|
| 41.03 | 58.97 |
| According to VolSite | |

| HET Code: | ATP |
|---|---|
| Formula: | C10H12N5O13P3 |
| Molecular weight: | 503.149 g/mol |
| DrugBank ID: | DB00171 |
| Buried Surface Area: | 59.16 % |
| Polar Surface area: | 319.88 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 17 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 4 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 2 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| 56.0916 | -10.5117 | 61.2204 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C5' | CD1 | LEU- 26 | 4.36 | 0 | Hydrophobic |
| C4' | CB | LEU- 26 | 3.75 | 0 | Hydrophobic |
| C1' | CB | LEU- 26 | 4.07 | 0 | Hydrophobic |
| O2' | NZ | LYS- 43 | 3.26 | 142.82 | H-Bond (Protein Donor) |
| N6 | OE1 | GLN- 118 | 2.83 | 156.19 | H-Bond (Ligand Donor) |
| N6 | O | GLN- 118 | 2.73 | 160.92 | H-Bond (Ligand Donor) |
| O1G | OG1 | THR- 120 | 2.63 | 132.42 | H-Bond (Protein Donor) |
| C5' | CG2 | THR- 120 | 3.84 | 0 | Hydrophobic |
| C4' | CB | ALA- 143 | 3.7 | 0 | Hydrophobic |
| C3' | CB | ASP- 145 | 3.9 | 0 | Hydrophobic |
| O1G | N | GLY- 255 | 2.75 | 125.18 | H-Bond (Protein Donor) |