2.600 Å
X-ray
2005-01-29
Name: | Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic |
---|---|
ID: | GLGS_SOLTU |
AC: | P23509 |
Organism: | Solanum tuberosum |
Reign: | Eukaryota |
TaxID: | 4113 |
EC Number: | 2.7.7.27 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 43.843 |
---|---|
Number of residues: | 36 |
Including | |
Standard Amino Acids: | 36 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.789 | 658.125 |
% Hydrophobic | % Polar |
---|---|
41.03 | 58.97 |
According to VolSite |
HET Code: | ATP |
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Formula: | C10H12N5O13P3 |
Molecular weight: | 503.149 g/mol |
DrugBank ID: | DB00171 |
Buried Surface Area: | 59.16 % |
Polar Surface area: | 319.88 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 17 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
56.0916 | -10.5117 | 61.2204 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C5' | CD1 | LEU- 26 | 4.36 | 0 | Hydrophobic |
C4' | CB | LEU- 26 | 3.75 | 0 | Hydrophobic |
C1' | CB | LEU- 26 | 4.07 | 0 | Hydrophobic |
O2' | NZ | LYS- 43 | 3.26 | 142.82 | H-Bond (Protein Donor) |
N6 | OE1 | GLN- 118 | 2.83 | 156.19 | H-Bond (Ligand Donor) |
N6 | O | GLN- 118 | 2.73 | 160.92 | H-Bond (Ligand Donor) |
O1G | OG1 | THR- 120 | 2.63 | 132.42 | H-Bond (Protein Donor) |
C5' | CG2 | THR- 120 | 3.84 | 0 | Hydrophobic |
C4' | CB | ALA- 143 | 3.7 | 0 | Hydrophobic |
C3' | CB | ASP- 145 | 3.9 | 0 | Hydrophobic |
O1G | N | GLY- 255 | 2.75 | 125.18 | H-Bond (Protein Donor) |