2.110 Å
X-ray
2004-11-19
| Name: | Uridine phosphorylase |
|---|---|
| ID: | UDP_SALTY |
| AC: | P0A1F6 |
| Organism: | Salmonella typhimurium |
| Reign: | Bacteria |
| TaxID: | 99287 |
| EC Number: | 2.4.2.3 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 15 % |
| D | 85 % |
| B-Factor: | 22.015 |
|---|---|
| Number of residues: | 26 |
| Including | |
| Standard Amino Acids: | 26 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.327 | 698.625 |
| % Hydrophobic | % Polar |
|---|---|
| 48.79 | 51.21 |
| According to VolSite | |

| HET Code: | ANU |
|---|---|
| Formula: | C9H10N2O5 |
| Molecular weight: | 226.186 g/mol |
| DrugBank ID: | DB04627 |
| Buried Surface Area: | 71.6 % |
| Polar Surface area: | 91.59 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 7 |
| H-Bond Donors: | 2 |
| Rings: | 3 |
| Aromatic rings: | 0 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 1 |
| X | Y | Z |
|---|---|---|
| -6.47725 | 47.6608 | 88.4249 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C5' | CG1 | ILE- 3069 | 4.08 | 0 | Hydrophobic |
| N3 | NE2 | GLN- 3166 | 3.03 | 129.02 | H-Bond (Protein Donor) |
| O4 | NH1 | ARG- 3168 | 3.25 | 125.41 | H-Bond (Protein Donor) |
| C1' | CB | GLU- 3196 | 4.37 | 0 | Hydrophobic |
| O3' | N | MET- 3197 | 3.03 | 158.45 | H-Bond (Protein Donor) |
| C3' | CB | MET- 3197 | 3.56 | 0 | Hydrophobic |
| C2' | CG | MET- 3197 | 3.52 | 0 | Hydrophobic |
| C5' | SD | MET- 3197 | 4.15 | 0 | Hydrophobic |
| O3' | OE1 | GLU- 3198 | 3.4 | 129.36 | H-Bond (Ligand Donor) |